Factsheet for Zm00001d008209_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00602	Sorghum	plastid	80.78	93.8
TraesCS3D01G159000.1	Wheat	plastid	66.19	77.5
TraesCS3B01G178000.1	Wheat	plastid	66.19	77.5
TraesCS3A01G151100.1	Wheat	plastid	65.48	76.67
HORVU3Hr1G030750.1	Barley	plastid	65.12	76.25
Zm00001d009267_P001	Maize	cytosol	2.85	72.73
Zm00001d050635_P001	Maize	plastid	38.08	62.57
Zm00001d016660_P001	Maize	cytosol	38.08	62.21
Zm00001d016661_P001	Maize	plastid	38.08	62.21
VIT_07s0005g02410.t01	Wine grape	plastid	54.45	60.47
KRG96627	Soybean	nucleus, plastid	54.8	59.23
CDY58761	Canola	plastid	51.6	56.2
CDX76611	Canola	plastid	50.53	56.13
CDX93994	Canola	plastid	51.96	55.94
Bra014414.1-P	Field mustard	plastid	50.53	55.04
CDY11395	Canola	plastid	50.18	54.65
Bra007655.1-P	Field mustard	plastid	49.82	54.47
KRH33684	Soybean	nucleus, plastid	50.53	53.99
KRH68358	Soybean	plastid	44.84	53.39
Zm00001d011104_P001	Maize	plastid	44.84	50.81
Zm00001d035761_P001	Maize	plastid	43.77	49.0
Zm00001d014732_P002	Maize	mitochondrion	38.08	48.64
Zm00001d030339_P001	Maize	mitochondrion	30.96	47.54
Zm00001d022631_P002	Maize	plastid	36.3	47.22
AT3G62030.2	Thale cress	endoplasmic reticulum	51.25	46.01
Zm00001d036442_P001	Maize	mitochondrion	38.43	38.99
Zm00001d014731_P017	Maize	endoplasmic reticulum, vacuole	32.03	30.41
Zm00001d013010_P002	Maize	plastid	33.1	30.19
Zm00001d037189_P004	Maize	extracellular	35.59	25.71
Zm00001d007826_P002	Maize	nucleus	31.32	13.13
Zm00001d018944_P004	Maize	nucleus	32.03	12.77
Zm00001d053620_P016	Maize	nucleus	27.4	9.4
Zm00001d015729_P005	Maize	nucleus	27.76	9.08

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	UniProt:A0A1D6FAW5	ProteinID:AQK89190.1	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF383	SUPFAM:SSF50891	UniParc:UPI00084234CB	EnsemblPlantsGene:Zm00001d008209
EnsemblPlants:Zm00001d008209_P001	EnsemblPlants:Zm00001d008209_T001	SEG:seg	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase

Coordinates

chr8:-:1238180..1242266

Molecular Weight (calculated)

30282.6 Da

IEP (calculated)

8.558

GRAVY (calculated)

-0.044

Length

281 amino acids

Sequence
(BLAST)

001: MACMPAVSAP SVLAPAPAST RTHLCYSTEM RRGALSLRPA RAIPTLRLGG HRDARGAVVV RATAAEGAVE LQAKVTSKCF FDVEVGGEPA GRIVIGLFGE
101: VVPKTVDNFR ALCTGEKGYG YKGCSFHRII KDFMIQGGDF QQNNGTGGRS IYGECFDDEN FTRAYRKLIL NEVLLNCKNV DVSGAISLVL KLRGSLAYFV
201: AVKHVGPGVL SMANAGPNTN GSQFFICTVK TPWLDNRHVV FGHVLEGMDV VKQLESQETS RSDTPKQPCR IVNCGEVPLD S

Best Arabidopsis Sequence Match ( AT3G62030.3 )
(BLAST)

001: MASSSSMQMV HTSRSIAQIG FGVKSQLVSA NRTTQSVCFG ARSSGIALSS RLHYASPIKQ FSGVYATTKH QRTACVKSMA AEEEVIEPQA KVTNKVYFDV
101: EIGGEVAGRI VMGLFGEVVP KTVENFRALC TGEKKYGYKG SSFHRIIKDF MIQGGDFTEG NGTGGISIYG AKFEDENFTL KHTGPGILSM ANAGPNTNGS
201: QFFICTVKTS WLDNKHVVFG QVIEGMKLVR TLESQETRAF DVPKKGCRIY ACGELPLDA

Arabidopsis Description

ROC4Rotamase CYP 4 [Source:UniProtKB/TrEMBL;Acc:F4IX26]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.