Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 5
- vacuole 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d013590_P001 | |
| Zm00001d029910_P001 | |
| Zm00001d047092_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29960.1 | Zm00001d013590_P001 | AT1G13980.1 | 10715321 |
| AT2G29960.1 | Zm00001d029910_P001 | AT1G13980.1 | 10715321 |
| AT2G29960.1 | Zm00001d047092_P001 | AT1G13980.1 | 10715321 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009267_P001 | Maize | cytosol | 2.7 | 72.73 |
| OQU77068 | Sorghum | endoplasmic reticulum | 42.57 | 59.15 |
| Zm00001d050635_P001 | Maize | plastid | 33.78 | 58.48 |
| Zm00001d016660_P001 | Maize | cytosol | 33.78 | 58.14 |
| Zm00001d016661_P001 | Maize | plastid | 33.78 | 58.14 |
| Bra018353.1-P | Field mustard | endoplasmic reticulum | 36.82 | 54.23 |
| AT2G29960.1 | Thale cress | endoplasmic reticulum | 36.82 | 54.23 |
| CDY55458 | Canola | endoplasmic reticulum | 36.82 | 54.23 |
| CDY58941 | Canola | endoplasmic reticulum | 36.82 | 54.23 |
| Bra002623.1-P | Field mustard | cytosol | 35.47 | 53.57 |
| KRG98290 | Soybean | endoplasmic reticulum | 36.82 | 53.43 |
| CDY61026 | Canola | endoplasmic reticulum | 35.47 | 52.24 |
| CDX71155 | Canola | endoplasmic reticulum | 35.47 | 52.24 |
| Bra006748.1-P | Field mustard | endoplasmic reticulum | 35.47 | 52.24 |
| KRH30309 | Soybean | endoplasmic reticulum | 35.81 | 51.96 |
| CDY52123 | Canola | endoplasmic reticulum | 35.81 | 51.96 |
| CDX80340 | Canola | endoplasmic reticulum | 35.81 | 51.96 |
| AT5G58710.1 | Thale cress | endoplasmic reticulum | 35.47 | 51.47 |
| GSMUA_Achr7P04880_001 | Banana | cytosol | 33.11 | 50.52 |
| Os06t0708400-01 | Rice | plasma membrane | 34.46 | 49.04 |
| Zm00001d030339_P001 | Maize | mitochondrion | 29.05 | 46.99 |
| Zm00001d014732_P002 | Maize | mitochondrion | 34.8 | 46.82 |
| Zm00001d022631_P002 | Maize | plastid | 31.08 | 42.59 |
| Zm00001d036442_P001 | Maize | mitochondrion | 37.84 | 40.43 |
| Zm00001d011104_P001 | Maize | plastid | 32.09 | 38.31 |
| Zm00001d035761_P001 | Maize | plastid | 32.43 | 38.25 |
| Zm00001d008209_P001 | Maize | plastid | 30.41 | 32.03 |
| Zm00001d037189_P004 | Maize | extracellular | 31.76 | 24.16 |
| Zm00001d013010_P002 | Maize | plastid | 23.99 | 23.05 |
| Zm00001d007826_P002 | Maize | nucleus | 30.07 | 13.28 |
| Zm00001d018944_P004 | Maize | nucleus | 30.07 | 12.62 |
| Zm00001d053620_P016 | Maize | nucleus | 25.34 | 9.16 |
| Zm00001d015729_P005 | Maize | nucleus | 25.68 | 8.85 |
Protein Annotations
| EntrezGene:107522027 | MapMan:18.12.1 | Gene3D:2.40.100.10 | UniProt:A0A1D6GVX2 | ProteinID:AQK67027.1 | InterPro:Cyclophilin-like_dom_sf |
| InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 |
| GO:GO:0003824 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016853 | GO:GO:0019538 | InterPro:IPR002130 | InterPro:IPR029000 | PFAM:PF00160 | PRINTS:PR00153 |
| ScanProsite:PS00170 | PFscan:PS50072 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF309 | SUPFAM:SSF50891 | UniParc:UPI0008449452 |
| EnsemblPlantsGene:Zm00001d014731 | EnsemblPlants:Zm00001d014731_P017 | EnsemblPlants:Zm00001d014731_T017 | SEG:seg | : | : |
Description
Peptidyl-prolyl cis-trans isomerase CYP20-1
Coordinates
chr5:+:60954621..60956440
Molecular Weight (calculated)
32381.1 Da
IEP (calculated)
9.512
GRAVY (calculated)
-0.130
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MHGYIYVVGP SLLPACMYAL LPAAPNHNSI SHVHTSTQAG SCWDCLGTPF LKQQVYTLYI YSSQIIIVAT KCRRTLLLGT PKALTDTPSM HAMYACVFFL
101: PFFRRELPST LHRYASLCSC MGHCMCTKNP SSLYIYNTHT YTRTYTHARA GEKGIAKSGK PLWYKGSTFH RIIPGFMIQG GDFTNGNGTG GESIYGSTIF
201: SDENFKHTHA KAGTLSMANY GPDSNGSQFF ITTVDENRLP KKLDGRHVVF GKVVKGMDVV RKIEAEGQLT GVPKAKVVIA NSGQLPAPAA AGHRDL
101: PFFRRELPST LHRYASLCSC MGHCMCTKNP SSLYIYNTHT YTRTYTHARA GEKGIAKSGK PLWYKGSTFH RIIPGFMIQG GDFTNGNGTG GESIYGSTIF
201: SDENFKHTHA KAGTLSMANY GPDSNGSQFF ITTVDENRLP KKLDGRHVVF GKVVKGMDVV RKIEAEGQLT GVPKAKVVIA NSGQLPAPAA AGHRDL
001: MAKASFILLG TLFLFGAIAS IQAKEDLKEV THKVYFDVEI DGKSAGRVVI GLFGKAVPKT AENFRALCTG EKGVGKSGKP LHYKGSKFHR IIPSFMIQGG
101: DFTHGNGMGG ESIYGQKFAD ENFKLKHTGP GVLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE GKQSGTPKSK VVIADSGELP
201: L
101: DFTHGNGMGG ESIYGQKFAD ENFKLKHTGP GVLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE GKQSGTPKSK VVIADSGELP
201: L
Arabidopsis Description
CYP19-4Peptidyl-prolyl cis-trans isomerase CYP19-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDP4]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.