Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 9
- vacuole 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0326600-01 | |
| Os03t0666100-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29960.1 | Os02t0326600-01 | AT1G13980.1 | 10715321 |
| AT2G29960.1 | Os03t0666100-00 | AT1G13980.1 | 10715321 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P04880_001 | Banana | cytosol | 64.42 | 69.07 |
| OQU77068 | Sorghum | endoplasmic reticulum | 70.67 | 69.01 |
| KRG98290 | Soybean | endoplasmic reticulum | 67.31 | 68.63 |
| Bra006748.1-P | Field mustard | endoplasmic reticulum | 65.87 | 68.16 |
| CDX71155 | Canola | endoplasmic reticulum | 65.87 | 68.16 |
| CDY61026 | Canola | endoplasmic reticulum | 65.87 | 68.16 |
| KRH30309 | Soybean | endoplasmic reticulum | 66.83 | 68.14 |
| CDY55458 | Canola | endoplasmic reticulum | 65.38 | 67.66 |
| CDY58941 | Canola | endoplasmic reticulum | 65.38 | 67.66 |
| Bra018353.1-P | Field mustard | endoplasmic reticulum | 65.38 | 67.66 |
| EER88931 | Sorghum | endoplasmic reticulum | 71.63 | 67.42 |
| CDY52123 | Canola | endoplasmic reticulum | 65.87 | 67.16 |
| CDX80340 | Canola | endoplasmic reticulum | 65.87 | 67.16 |
| Os06t0708500-01 | Rice | plasma membrane, plastid | 72.6 | 67.11 |
| EER88932 | Sorghum | endoplasmic reticulum | 70.19 | 66.06 |
| Bra002623.1-P | Field mustard | cytosol | 62.02 | 65.82 |
| AT5G58710.1 | Thale cress | endoplasmic reticulum | 64.42 | 65.69 |
| AT2G29960.1 | Thale cress | endoplasmic reticulum | 62.98 | 65.17 |
| Os09t0571400-01 | Rice | mitochondrion | 54.33 | 63.13 |
| Os02t0121300-01 | Rice | extracellular | 51.92 | 62.79 |
| Os09t0537600-01 | Rice | endoplasmic reticulum | 51.92 | 50.23 |
| Os10t0154700-01 | Rice | cytosol | 43.27 | 49.72 |
| Os03t0811600-01 | Rice | nucleus, plastid | 48.08 | 49.02 |
| Os05t0103200-01 | Rice | plastid | 50.48 | 42.0 |
| Zm00001d014731_P017 | Maize | endoplasmic reticulum, vacuole | 49.04 | 34.46 |
| Os06t0216800-01 | Rice | cytosol | 47.12 | 24.75 |
| Os02t0761100-01 | Rice | cytosol | 45.19 | 23.33 |
| Os02t0204300-01 | Rice | nucleus | 0.0 | 0.0 |
| Os07t0179200-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | EntrezGene:4342020 | ProteinID:BAD53620.1 | ProteinID:BAD53627.1 | ProteinID:BAS99433.1 |
| InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom | ProteinID:EAZ38238.1 | GO:GO:0000413 |
| GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 | InterPro:IPR002130 | InterPro:IPR029000 |
| EnsemblPlantsGene:Os06g0708400 | EnsemblPlants:Os06t0708400-01 | PFAM:PF00160 | PIRSF:PIRSF001467 | PRINTS:PR00153 | ScanProsite:PS00170 |
| PFscan:PS50072 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF309 | UniProt:Q5Z9I0 | SUPFAM:SSF50891 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0000446DE6 | RefSeq:XP_015643306.1 | : | : | : |
Description
CYCLOPHILIN 19-4Cyclophilin, Cold tolerance (Os06t0708400-01)
Coordinates
chr6:+:29971111..29972973
Molecular Weight (calculated)
22112.7 Da
IEP (calculated)
9.452
GRAVY (calculated)
-0.049
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARETSRHA SLCLWLALVA ATLSLAQAVE SEAELTKVTT KVFFDITING KPAGRIVMGL FGNTVPKTAE NFRAICTGEK GLGKSGKPLS YKGTPFHRII
101: PGFMIQGGDT VSGNGTGCDS IYGGMFPDEN FKINHSAPGL LSMANYAKDT NGSQFFITTV KLTRLDGKHV VFGKVLSGMD VVYKIEAEGS QSGTPRSKVL
201: ISDSGELK
101: PGFMIQGGDT VSGNGTGCDS IYGGMFPDEN FKINHSAPGL LSMANYAKDT NGSQFFITTV KLTRLDGKHV VFGKVLSGMD VVYKIEAEGS QSGTPRSKVL
201: ISDSGELK
001: MASSVTLLLW SLLLLGTLSA IQAKKSKENL KEITHKVYFD VEIDGKAAGR IVMGLFGKTV PKTVENFRAL CTGEKGIGKN GKALHYKGSS FHRIIPSFML
101: QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGFLSMAN AGQDTNGSQF FITTVTTSWL DGRHVVFGKV VTGMDVVYKV EAEGNQSGTP KSKVVIVDSG
201: ELPL
101: QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGFLSMAN AGQDTNGSQF FITTVTTSWL DGRHVVFGKV VTGMDVVYKV EAEGNQSGTP KSKVVIVDSG
201: ELPL
Arabidopsis Description
CYP20-1Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UBF4]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.