Factsheet for Os09t0571400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
cytosol 3
mitochondrion 3
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

mitochondrion: 15276442
nucleus: 18022940
mitochondrion: 19010998
mitochondrion: 23027867
plasma membrane: 27800704
plastid: 27992503

msms PMID: 15276442 doi

BK Kristensen, P Askerlund, NV Bykova, H Egsgaard, IM Møller

Risø National Laboratory, Plant Research Department, P.O. Box 49, DK-4000 Roskilde, Denmark.

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os03t0319300-01
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56070.1	Os01t0267900-01	AT5G21274.1	17360592
AT3G56070.1	Os01t0279300-01	AT5G21274.1	17360592
AT3G56070.1	Os01t0810300-01	AT5G21274.1	17360592
AT3G56070.1	Os03t0319300-01	AT5G21274.1	17360592
AT3G56070.1	Os05t0491000-01	AT5G21274.1	17360592
AT3G56070.1	Os05t0491100-01	AT5G21274.1	17360592
AT3G56070.1	Os07t0687200-02	AT5G21274.1	17360592
AT3G56070.1	Os12t0603800-00	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96387	Sorghum	cytosol	84.92	86.86
TraesCS4D01G001600.1	Wheat	mitochondrion	82.12	82.12
KRG97056	Soybean	cytosol	79.89	81.71
TraesCS4A01G312600.1	Wheat	cytosol, mitochondrion, plastid	82.12	81.67
VIT_14s0081g00700.t01	Wine grape	cytosol	79.33	81.61
KRH68802	Soybean	cytosol	79.33	81.14
AT3G56070.1	Thale cress	cytosol	77.09	78.41
PGSC0003DMT400073838	Potato	cytosol	76.54	78.29
Solyc11g006070.1.1	Tomato	cytosol, extracellular, unclear	65.36	76.47
Bra007214.1-P	Field mustard	cytosol	77.09	75.82
CDY27248	Canola	cytosol	77.09	75.82
CDX72175	Canola	cytosol	77.09	75.41
HORVU4Hr1G000910.3	Barley	cytosol	81.01	72.86
Os02t0121300-01	Rice	extracellular	69.83	72.67
Os10t0154700-01	Rice	cytosol	59.78	59.12
Os06t0708400-01	Rice	plasma membrane	63.13	54.33
Os06t0708500-01	Rice	plasma membrane, plastid	65.36	52.0
Os03t0811600-01	Rice	nucleus, plastid	56.42	49.51
Os09t0537600-01	Rice	endoplasmic reticulum	52.51	43.72
Os05t0103200-01	Rice	plastid	58.66	42.0
Os06t0216800-01	Rice	cytosol	60.89	27.53
Os02t0761100-01	Rice	cytosol	59.22	26.3
Os07t0179200-01	Rice	nucleus	0.0	0.0
Os02t0204300-01	Rice	nucleus	0.0	0.0

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	EntrezGene:4347920	EMBL:AK103109	ProteinID:BAD46607.1	ProteinID:BAF25907.1
ProteinID:BAT09525.1	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	ProteinID:EAZ45747.1
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005794	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:0046686
InterPro:IPR002130	InterPro:IPR029000	EnsemblPlantsGene:Os09g0571400	EnsemblPlants:Os09t0571400-01	PFAM:PF00160	PIRSF:PIRSF001467
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF396	UniProt:Q651B0
SUPFAM:SSF50891	UniParc:UPI00000A0323	RefSeq:XP_015610625.1	RefSeq:XP_015610626.1	SEG:seg	:

Description

CYCLOPHILIN 19-3Cyclophilin 1. (Os09t0571400-01)

Coordinates

chr9:+:22809907..22810986

Molecular Weight (calculated)

19199.8 Da

IEP (calculated)

7.897

GRAVY (calculated)

-0.272

Length

179 amino acids

Sequence
(BLAST)

001: MASKNPKVFF DILIGKARAG RVVMELFADT VPKTAENFRC LCTGEKGLGA SGKPLHYKGS AFHRIIPNFM CQGGDFTRGN GTGGESIYGD RFADENFKLR
101: HTGPGVLSMA NAGPNTNGSQ FFICTTRTTW LDGKHVVFGK VVDGYTVVEK MEQVGSGSGG TAERVLIEDC GQLADDHAN

Best Arabidopsis Sequence Match ( AT3G56070.2 )
(BLAST)

001: MANPKVFFDI LIGKMKAGRV VMELFADVTP RTANNFRALC TGENGIGKAG KALHYKGSAF HRIIPGFMCQ GGDFTRGNGT GGESIYGSKF EDENFKLKHT
101: GPGILSMANS GPNTNGSQFF ICTEKTSWLD GKHVVFGKVV DGYNVVKAME DVGSDMGNPS ERVVIEDCGE LKNPSS

Arabidopsis Description

CYP19-3Peptidyl-prolyl cis-trans isomerase CYP19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q38867]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.