Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
plastid: 27992503 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400046278 | Potato | cytosol | 51.01 | 98.7 |
| Os01t0267900-01 | Rice | cytosol | 98.66 | 98.66 |
| Os03t0319300-01 | Rice | cytosol, extracellular, nucleus | 98.66 | 98.66 |
| Bra020155.1-P | Field mustard | cytosol | 98.66 | 98.66 |
| Bra006595.1-P | Field mustard | cytosol | 98.66 | 98.66 |
| Os07t0687200-02 | Rice | cytosol | 98.66 | 98.66 |
| PGSC0003DMT400018569 | Potato | cytosol | 98.66 | 98.66 |
| Bra002368.1-P | Field mustard | cytosol | 98.66 | 98.66 |
| PGSC0003DMT400070437 | Potato | cytosol | 98.66 | 98.66 |
| Solyc10g077010.1.1 | Tomato | cytosol | 98.66 | 98.66 |
| Solyc11g072240.1.1 | Tomato | cytosol | 98.66 | 98.66 |
| Solyc12g099990.1.1 | Tomato | nucleus | 98.66 | 98.66 |
| VIT_08s0040g00470.t01 | Wine grape | cytosol | 97.99 | 97.99 |
| CDY65072 | Canola | cytosol | 97.99 | 97.99 |
| CDY56411 | Canola | cytosol | 97.99 | 97.99 |
| Bra019453.1-P | Field mustard | cytosol | 97.99 | 97.99 |
| CDY04474 | Canola | cytosol | 97.99 | 97.99 |
| Bra012037.1-P | Field mustard | cytosol | 97.99 | 97.99 |
| PGSC0003DMT400058435 | Potato | cytosol | 97.99 | 97.99 |
| Solyc01g008950.2.1 | Tomato | nucleus | 97.99 | 97.99 |
| Solyc10g081170.1.1 | Tomato | extracellular | 97.99 | 97.99 |
| CDX92401 | Canola | cytosol | 87.92 | 97.76 |
| Os05t0491100-01 | Rice | cytosol, extracellular | 97.32 | 97.32 |
| GSMUA_Achr6P15990_001 | Banana | cytosol | 97.32 | 97.32 |
| AT3G56800.1 | Thale cress | cytosol | 97.32 | 97.32 |
| AT5G21274.1 | Thale cress | cytosol | 97.32 | 97.32 |
| Bra000214.1-P | Field mustard | cytosol | 97.32 | 97.32 |
| Bra003251.1-P | Field mustard | cytosol | 97.32 | 97.32 |
| Bra014671.1-P | Field mustard | cytosol | 97.32 | 97.32 |
| Bra007269.1-P | Field mustard | cytosol | 96.64 | 96.64 |
| KRG94975 | Soybean | nucleus | 96.64 | 96.64 |
| GSMUA_Achr6P23670_001 | Banana | cytosol | 96.64 | 96.64 |
| CDY12321 | Canola | cytosol | 93.96 | 96.55 |
| Bra034981.1-P | Field mustard | cytosol | 93.96 | 96.55 |
| PGSC0003DMT400054299 | Potato | cytosol | 73.15 | 96.46 |
| Bra025438.1-P | Field mustard | cytosol | 73.15 | 96.46 |
| CDX96148 | Canola | cytosol | 95.97 | 95.97 |
| Bra004166.1-P | Field mustard | cytosol | 95.97 | 95.97 |
| VIT_06s0009g01910.t01 | Wine grape | cytosol | 97.99 | 95.42 |
| CDY55678 | Canola | cytosol | 95.3 | 95.3 |
| CDY27651 | Canola | cytosol | 95.3 | 94.67 |
| CDX99690 | Canola | cytosol | 94.63 | 94.63 |
| AT1G66410.2 | Thale cress | cytosol | 96.64 | 90.57 |
| AT2G41110.2 | Thale cress | cytosol | 97.32 | 90.06 |
| KRH18664 | Soybean | cytosol | 83.22 | 88.57 |
| PGSC0003DMT400014123 | Potato | mitochondrion | 69.13 | 84.43 |
| TraesCS3B01G219900.1 | Wheat | cytosol | 97.99 | 83.91 |
| AT5G37780.3 | Thale cress | cytosol | 96.64 | 82.29 |
| CDY48191 | Canola | cytosol | 97.99 | 81.56 |
| Bra034317.1-P | Field mustard | cytosol | 97.99 | 81.56 |
| CDX77060 | Canola | cytosol | 97.99 | 81.11 |
| CDX75970 | Canola | cytosol | 61.74 | 80.7 |
| AT2G27030.3 | Thale cress | cytosol | 97.32 | 80.11 |
| TraesCS3A01G191900.1 | Wheat | cytosol | 83.22 | 77.99 |
| TraesCS3D01G194500.2 | Wheat | cytosol | 83.22 | 77.99 |
| KRG89812 | Soybean | cytosol, mitochondrion | 82.55 | 74.55 |
| PGSC0003DMT400097662 | Potato | cytosol, mitochondrion | 85.91 | 73.99 |
| CDY30947 | Canola | cytosol | 97.32 | 69.38 |
| AT3G43810.2 | Thale cress | cytosol | 97.32 | 67.76 |
| Os03t0743500-02 | Rice | nucleus | 69.8 | 67.53 |
| Os01t0810300-01 | Rice | plasma membrane | 83.89 | 66.84 |
| CDY21220 | Canola | cytosol | 96.64 | 65.16 |
| CDY57144 | Canola | cytosol | 63.76 | 65.07 |
| Os12t0603800-00 | Rice | cytosol | 69.13 | 62.05 |
| Os11t0586200-00 | Rice | cytosol | 53.02 | 52.32 |
| AT2G41090.1 | Thale cress | cytosol | 61.74 | 48.17 |
| Os08t0117400-01 | Rice | plasma membrane | 47.65 | 47.97 |
| Os05t0491000-01 | Rice | cytosol | 47.65 | 45.81 |
| Os10t0389000-01 | Rice | plasma membrane | 47.65 | 37.17 |
| Os05t0577500-01 | Rice | cytosol, mitochondrion | 42.95 | 36.99 |
| Os01t0505600-01 | Rice | cytosol | 44.97 | 31.75 |
| Os07t0618800-01 | Rice | plasma membrane | 44.3 | 31.58 |
| AT2G41100.1 | Thale cress | cytosol | 59.73 | 27.47 |
| Os01t0604500-01 | Rice | cytosol | 43.62 | 26.1 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | EntrezGene:4326903 | EMBL:AK058646 | ProteinID:BAA87825.1 | ProteinID:BAF04661.1 |
| ProteinID:BAS71582.1 | ProteinID:EEE54334.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | GO:GO:0046872 | InterPro:IPR002048 | EnsemblPlantsGene:Os01g0279300 | EnsemblPlants:Os01t0279300-01 |
| PFAM:PF13499 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF250 | UniProt:Q0JNL7 |
| SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI00000A1744 | RefSeq:XP_015621336.1 | : | : |
Description
calmodulin 3Similar to Calmodulin 1 (Fragment). (Os01t0279300-01)
Coordinates
chr1:+:9887657..9889123
Molecular Weight (calculated)
16832.6 Da
IEP (calculated)
3.876
GRAVY (calculated)
-0.602
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQLTDDQI AEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVEEMIREAD VDGDGQINYD EFVKVMMAK
101: ISAAELRHVM TNLGEKLTDE EVEEMIREAD VDGDGQINYD EFVKVMMAK
001: MADQLTDDQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMARKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK
101: ISAAELRHVM TNLGEKLTDE EVDEMIKEAD VDGDGQINYE EFVKVMMAK
Arabidopsis Description
CAM5Calmodulin 5 [Source:UniProtKB/TrEMBL;Acc:F4IVN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.