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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os02t0744700-01
Os03t0319300-01
Os03t0586600-01
Os03t0743500-02
Os05t0491000-01
Os05t0491100-01
Os06t0229800-01
Os07t0463100-01
Os07t0687200-02
Os08t0426000-00
Os10t0437600-00
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G56270.1 Os03t0586600-01 AT2G04630.1 21798944
AT3G56270.1 Os07t0463100-01 AT2G04630.1 21798944
AT3G56270.1 Os08t0426000-00 AT2G04630.1 21798944
AT3G56270.1 Os01t0267900-01 AT2G41090.1 17360592
AT3G56270.1 Os01t0279300-01 AT2G41090.1 17360592
AT3G56270.1 Os01t0810300-01 AT2G41090.1 17360592
AT3G56270.1 Os03t0319300-01 AT2G41090.1 17360592
AT3G56270.1 Os05t0491000-01 AT2G41090.1 17360592
AT3G56270.1 Os05t0491100-01 AT2G41090.1 17360592
AT3G56270.1 Os07t0687200-02 AT2G41090.1 17360592
AT3G56270.1 Os12t0603800-00 AT2G41090.1 17360592
AT3G56270.1 Os01t0267900-01 AT2G41100.1 17360592
AT3G56270.1 Os01t0279300-01 AT2G41100.1 17360592
AT3G56270.1 Os01t0810300-01 AT2G41100.1 17360592
AT3G56270.1 Os03t0319300-01 AT2G41100.1 17360592
AT3G56270.1 Os05t0491000-01 AT2G41100.1 17360592
AT3G56270.1 Os05t0491100-01 AT2G41100.1 17360592
AT3G56270.1 Os07t0687200-02 AT2G41100.1 17360592
AT3G56270.1 Os12t0603800-00 AT2G41100.1 17360592
AT3G56270.1 Os02t0744700-01 AT3G01180.1 21798944
AT3G56270.1 Os06t0229800-01 AT3G01180.1 21798944
AT3G56270.1 Os10t0437600-00 AT3G01180.1 21798944
AT3G56270.1 Os03t0743500-02 AT4G14640.1 17360592
AT3G56270.1 Os01t0267900-01 AT5G21274.1 17360592
AT3G56270.1 Os01t0279300-01 AT5G21274.1 17360592
AT3G56270.1 Os01t0810300-01 AT5G21274.1 17360592
AT3G56270.1 Os03t0319300-01 AT5G21274.1 17360592
AT3G56270.1 Os05t0491000-01 AT5G21274.1 17360592
AT3G56270.1 Os05t0491100-01 AT5G21274.1 17360592
AT3G56270.1 Os07t0687200-02 AT5G21274.1 17360592
AT3G56270.1 Os12t0603800-00 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1B01G309200.1 Wheat cytosol 64.66 66.79
TraesCS1A01G299400.1 Wheat cytosol 64.66 66.55
TraesCS1D01G298300.1 Wheat nucleus 65.55 66.25
Zm00001d010610_P001 Maize cytosol 65.19 66.25
HORVU1Hr1G070120.3 Barley nucleus 65.02 59.55
GSMUA_Achr8P02810_001 Banana mitochondrion 36.93 39.43
KRH76097 Soybean nucleus 34.81 35.24
KRH65464 Soybean nucleus 34.45 34.82
Os03t0339700-01 Rice nucleus 33.39 34.74
KRG94824 Soybean cytosol 29.15 34.52
Os07t0677900-01 Rice nucleus 30.92 33.72
PGSC0003DMT400068339 Potato nucleus 33.39 33.16
KRH00407 Soybean nucleus 33.04 32.69
Solyc09g042710.2.1 Tomato nucleus 33.04 32.64
CDY18389 Canola nucleus 28.8 32.28
CDY70507 Canola cytosol, nucleus, plastid 24.38 31.87
CDY07266 Canola cytosol, mitochondrion 9.01 31.48
KRH40785 Soybean nucleus 27.21 31.43
Bra017122.1-P Field mustard nucleus 28.09 31.36
VIT_13s0067g02400.t01 Wine grape nucleus 28.8 30.52
AT3G51720.1 Thale cress nucleus 21.91 30.47
CDY65893 Canola nucleus 26.5 30.24
AT2G38370.2 Thale cress nucleus 28.62 30.06
CDX78029 Canola nucleus 21.02 29.02
CDX73702 Canola nucleus 21.02 28.81
CDY07733 Canola cytosol 16.96 28.66
CDY04348 Canola nucleus 13.96 28.62
Bra036780.1-P Field mustard nucleus 20.67 28.54
Bra000057.1-P Field mustard nucleus 24.38 28.28
PGSC0003DMT400074781 Potato nucleus 24.73 28.11
Solyc06g050350.2.1 Tomato nucleus 25.44 27.75
CDY19552 Canola mitochondrion 9.36 26.5
Bra000190.1-P Field mustard nucleus 21.91 26.16
CDY07602 Canola nucleus 21.91 26.16
CDY24901 Canola cytosol 21.55 25.74
KRH31225 Soybean cytosol 25.44 25.71
CDY58310 Canola nucleus 12.01 25.66
CDY11490 Canola nucleus 12.01 25.66
CDX93176 Canola cytosol 17.31 25.39
VIT_08s0058g01020.t01 Wine grape cytosol 37.1 24.97
KRG97647 Soybean plastid 24.38 24.64
CDY70964 Canola cytosol 7.42 24.14
KRH14870 Soybean nucleus 24.91 24.02
CDY06986 Canola cytosol 19.08 23.89
Bra016990.1-P Field mustard cytosol 19.08 23.89
OQU78181 Sorghum nucleus 55.48 22.79
KRH73215 Soybean cytosol 22.26 22.66
AT3G56270.1 Thale cress cytosol 17.67 22.42
AT2G40480.1 Thale cress cytosol 20.49 22.39
CDX72151 Canola cytosol 16.61 22.27
Bra007760.1-P Field mustard nucleus 12.37 21.81
Bra039972.1-P Field mustard cytosol 8.83 20.0
CDY27228 Canola cytosol 16.08 19.04
Bra007233.1-P Field mustard cytosol 15.9 18.83
CDY12396 Canola cytosol, endoplasmic reticulum, nucleus 9.54 16.02
Protein Annotations
MapMan:35.1EntrezGene:4339098EMBL:AK102615ProteinID:BAF17748.1ProteinID:BAS94531.1ncoils:Coil
ProteinID:EEE64082.1GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829
GO:GO:0008150GO:GO:0009903GO:GO:0009904GO:GO:0009987GO:GO:0016043EnsemblPlantsGene:Os05g0476100
EnsemblPlants:Os05t0476100-01PFAM:PF05701PANTHER:PTHR32054PANTHER:PTHR32054:SF14UniProt:Q0DHC5UniParc:UPI000043F4F7
InterPro:WebRefSeq:XP_015638269.1SEG:seg:::
Description
Protein of unknown function DUF827, plant family protein. (Os05t0476100-01)
Coordinates
chr5:+:23416463..23419334
Molecular Weight (calculated)
62259.5 Da
IEP (calculated)
10.229
GRAVY (calculated)
-0.616
Length
566 amino acids
Sequence
(BLAST)
001: MAEVAATQHG HAVAARAMPG RGEVDTSSPF ESVRQAVDLF GGGALSPWRH HHPPPPPPPP PLQLRPEEVE LMKVEEQTVK LEMELFVKEK ETFKVLKELQ
101: ATKQVADNLK LQLEKAASES AASARGHSDA GKVYPLPDTE RKCSYHTGQP VESAKGNQSA LTTLIKLNQA KAFLNMDTVM TIKRQIEEEK GSLEKTRERL
201: QLNRAKASSL EADLNKIVSQ LQAARGPKPT LEPSDIWLQM KQLNSEKEKH RKIADDSKNE IGELTATIEH TKSRTKTLQF RIVMAEKLKE ASRRGEALAL
301: AERKNLSNGE HEASTASDVT LSVEEHSVLV QKAEEADAAC RKKIDAAMQE LDQANRGKLE LLERVEEAMA AVETSRKALE EALKREESTN KAKLVAEESL
401: RKLRSEQIIQ NWRPTGNSSV KFKTSAATTA AVVAHRRAGS GIYDVNGLSL VTATPKSTKA MSIGQILSMK LDHRELEVAG KGGGAKKKVS LGQILSQKYD
501: ALSPLRIDHG GASRRQFHPR RRKLGFVVYA LLLAKHRHRK KRQPAAAAAA DSSSCTHGSF STKAVY
Best Arabidopsis Sequence Match ( AT2G38370.1 )
(BLAST)
001: MAEFPEPGTV NPDSDLSNGR AEKPEIDTSA PFESVREAAT RFGGFGFWRP SLNKLPDASQ ENIQEPDIMG LKAQAFELQR ELIVKERETL EVLKELEATK
101: ATVLKLQQRN EAYEEDTLRE EVDSHIKPAG VVLKDLSQAK MNLCKIASIR ESVEQLKNKL NEERAALEKT RERLMEKSLK VFSLEEEEVR VRFAKEGQTG
201: EKDLGMLNEV QRLSRQAQEV KKTGENAELE VVKAMAETES TRDKIRTAKI RLVAARKMKE AAREAEAVAI AEIEAVTGSM NVGKAEAVTI SAEEYSVLAR
301: SARDAEEEAR KRVEDAMSRV EEANVSKKDV LKKVDEAAQE IETSKRVLEE AVERVDAANA SKIEAEEALR KWRSENGQRR RLSSSVNNTS KFKSRRETTT
401: RLMDVNGLHL TYDVVDGSSS SSTVPVLKPT MSIGQILSKK LLLAEDSDMN VANERRKMSL GQMLAKNSSS DKTVSKRSEG KENEKRTKTR KRKSFGFAKI
501: SVLLNKESKN KKKKKKIALN LR
Arabidopsis Description
Plant protein of unknown function (DUF827) [Source:TAIR;Acc:AT2G38370]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.