Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24901 | Canola | cytosol | 66.41 | 72.57 |
| CDX93176 | Canola | cytosol | 52.12 | 69.95 |
| CDY06986 | Canola | cytosol | 59.07 | 67.7 |
| Bra016990.1-P | Field mustard | cytosol | 58.88 | 67.48 |
| Bra000190.1-P | Field mustard | nucleus | 61.2 | 66.88 |
| CDY07602 | Canola | nucleus | 61.2 | 66.88 |
| AT3G56270.1 | Thale cress | cytosol | 40.54 | 47.09 |
| KRH31225 | Soybean | cytosol | 42.28 | 39.11 |
| KRG97647 | Soybean | plastid | 42.28 | 39.11 |
| KRH73215 | Soybean | cytosol | 40.93 | 38.13 |
| VIT_13s0067g02400.t01 | Wine grape | nucleus | 38.22 | 37.08 |
| KRH14870 | Soybean | nucleus | 40.73 | 35.95 |
| AT3G51720.1 | Thale cress | nucleus | 25.29 | 32.19 |
| GSMUA_Achr8P21300_001 | Banana | nucleus | 25.1 | 30.37 |
| GSMUA_Achr3P09860_001 | Banana | nucleus | 23.94 | 29.74 |
| PGSC0003DMT400074781 | Potato | nucleus | 28.38 | 29.52 |
| Solyc06g050350.2.1 | Tomato | nucleus | 29.15 | 29.09 |
| AT2G38370.2 | Thale cress | nucleus | 29.92 | 28.76 |
| Os03t0339700-01 | Rice | nucleus | 28.57 | 27.21 |
| Os07t0677900-01 | Rice | nucleus | 27.03 | 26.98 |
| EER92305 | Sorghum | nucleus | 27.61 | 26.24 |
| Zm00001d007164_P001 | Maize | nucleus | 27.61 | 25.81 |
| EER97734 | Sorghum | nucleus | 28.76 | 25.78 |
| Zm00001d047516_P001 | Maize | nucleus | 26.64 | 25.32 |
| TraesCS2A01G106600.1 | Wheat | nucleus | 28.57 | 24.5 |
| GSMUA_Achr8P02810_001 | Banana | mitochondrion | 24.32 | 23.77 |
| HORVU2Hr1G018380.4 | Barley | nucleus | 28.19 | 22.78 |
| TraesCS2B01G124200.1 | Wheat | nucleus | 27.41 | 22.65 |
| TraesCS2D01G107200.1 | Wheat | nucleus | 26.64 | 22.19 |
| TraesCS1B01G309200.1 | Wheat | cytosol | 22.78 | 21.53 |
| TraesCS1A01G299400.1 | Wheat | cytosol | 22.59 | 21.27 |
| TraesCS1D01G298300.1 | Wheat | nucleus | 22.39 | 20.71 |
| Os05t0476100-01 | Rice | cytosol, nucleus, plastid | 22.39 | 20.49 |
| HORVU1Hr1G070120.3 | Barley | nucleus | 23.36 | 19.58 |
| Zm00001d010610_P001 | Maize | cytosol | 20.46 | 19.03 |
| OQU78181 | Sorghum | nucleus | 18.73 | 7.04 |
Protein Annotations
| MapMan:35.1 | EntrezGene:818643 | ProteinID:AAB87588.1 | ProteinID:AEC09836.1 | ArrayExpress:AT2G40480 | EnsemblPlantsGene:AT2G40480 |
| RefSeq:AT2G40480 | TAIR:AT2G40480 | RefSeq:AT2G40480-TAIR-G | EnsemblPlants:AT2G40480.1 | TAIR:AT2G40480.1 | EMBL:AY735595 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0008150 | GO:GO:0009903 | GO:GO:0009904 | GO:GO:0009987 | GO:GO:0016043 |
| RefSeq:NP_181580.2 | PFAM:PF05701 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF13 | UniProt:Q5XVC7 | UniParc:UPI000044319C |
| InterPro:Web | SEG:seg | : | : | : | : |
Description
WEB family protein At2g40480 [Source:UniProtKB/Swiss-Prot;Acc:Q5XVC7]
Coordinates
chr2:+:16910167..16912616
Molecular Weight (calculated)
58483.9 Da
IEP (calculated)
7.194
GRAVY (calculated)
-0.674
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: MALAEEQHQN YHVAEAIPGT PGIHDVRIQP GSENSGFCVD PVGVSNVPGI RRVGLRAEID TSPPFGSVQE AVTRFGGRGY WVPFKLDDTF NGEFDIKRME
101: EHAAELEKDL IVKELETLDV LEALGSTKRI VEDLKRQLQQ EALRCSDQLS SDIKEMNDEH CHHNPMSSPD LILMELKQAK MNLGKTMDNL VVIQSSVESL
201: NKKMKEEKDF LEKTRAKLTY GFGGPVSLAE ELSRIKVKPQ VQDEPLREQV KMVAEADETG LNLQNKNSLR TAEMRLVAAR KMEEAAKAAE ALAIAEITML
301: SSNGESQDDD SEFCFPEPPR SPVTPRGLRI DNDFSTDKSS RRGILKKLEE ATEGVKQSKQ ALEAALNRVE IANVKQLAAE NAFRGWTKDS LKGDNFTPLN
401: HTRRSFFSHL NKHHEPLDIL PKPVLKSNIS MRDVLRRKQV PKEDVVAPQR QSLEGQIPRR NVNLSQMLKE LKQDVKFSAR GEKEEVHEEK QYVTQRRKFG
501: FIHITLPLQK QSKKKSSL
101: EHAAELEKDL IVKELETLDV LEALGSTKRI VEDLKRQLQQ EALRCSDQLS SDIKEMNDEH CHHNPMSSPD LILMELKQAK MNLGKTMDNL VVIQSSVESL
201: NKKMKEEKDF LEKTRAKLTY GFGGPVSLAE ELSRIKVKPQ VQDEPLREQV KMVAEADETG LNLQNKNSLR TAEMRLVAAR KMEEAAKAAE ALAIAEITML
301: SSNGESQDDD SEFCFPEPPR SPVTPRGLRI DNDFSTDKSS RRGILKKLEE ATEGVKQSKQ ALEAALNRVE IANVKQLAAE NAFRGWTKDS LKGDNFTPLN
401: HTRRSFFSHL NKHHEPLDIL PKPVLKSNIS MRDVLRRKQV PKEDVVAPQR QSLEGQIPRR NVNLSQMLKE LKQDVKFSAR GEKEEVHEEK QYVTQRRKFG
501: FIHITLPLQK QSKKKSSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.