Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G299400.1 | Wheat | cytosol | 89.29 | 90.91 |
| TraesCS1B01G309200.1 | Wheat | cytosol | 88.93 | 90.88 |
| HORVU1Hr1G070120.3 | Barley | nucleus | 83.39 | 75.57 |
| Os05t0476100-01 | Rice | cytosol, nucleus, plastid | 66.25 | 65.55 |
| Zm00001d010610_P001 | Maize | cytosol | 62.86 | 63.2 |
| GSMUA_Achr8P02810_001 | Banana | mitochondrion | 34.64 | 36.6 |
| KRG94824 | Soybean | cytosol | 28.75 | 33.68 |
| KRH65464 | Soybean | nucleus | 33.39 | 33.39 |
| KRH76097 | Soybean | nucleus | 33.21 | 33.27 |
| KRH00407 | Soybean | nucleus | 33.21 | 32.52 |
| CDY18389 | Canola | nucleus | 29.11 | 32.28 |
| Bra017122.1-P | Field mustard | nucleus | 29.11 | 32.15 |
| KRH40785 | Soybean | nucleus | 28.04 | 32.04 |
| CDY70507 | Canola | cytosol, nucleus, plastid | 24.64 | 31.87 |
| PGSC0003DMT400068339 | Potato | nucleus | 32.32 | 31.75 |
| Solyc09g042710.2.1 | Tomato | nucleus | 32.14 | 31.41 |
| CDY65893 | Canola | nucleus | 26.79 | 30.24 |
| AT2G38370.2 | Thale cress | nucleus | 29.11 | 30.24 |
| AT3G51720.1 | Thale cress | nucleus | 21.79 | 29.98 |
| CDY07266 | Canola | cytosol, mitochondrion | 8.57 | 29.63 |
| CDX78029 | Canola | nucleus | 21.61 | 29.51 |
| CDX73702 | Canola | nucleus | 21.43 | 29.06 |
| Bra036780.1-P | Field mustard | nucleus | 21.25 | 29.02 |
| VIT_13s0067g02400.t01 | Wine grape | nucleus | 27.5 | 28.84 |
| TraesCS2D01G107200.1 | Wheat | nucleus | 31.96 | 28.78 |
| CDY07733 | Canola | cytosol | 16.79 | 28.06 |
| CDY04348 | Canola | nucleus | 13.75 | 27.9 |
| Bra000057.1-P | Field mustard | nucleus | 24.11 | 27.66 |
| PGSC0003DMT400074781 | Potato | nucleus | 23.93 | 26.91 |
| Solyc06g050350.2.1 | Tomato | nucleus | 24.64 | 26.59 |
| CDY19552 | Canola | mitochondrion | 9.46 | 26.5 |
| CDY58310 | Canola | nucleus | 12.14 | 25.66 |
| CDY11490 | Canola | nucleus | 12.14 | 25.66 |
| KRH31225 | Soybean | cytosol | 25.0 | 25.0 |
| Bra000190.1-P | Field mustard | nucleus | 20.71 | 24.47 |
| CDY07602 | Canola | nucleus | 20.71 | 24.47 |
| CDX93176 | Canola | cytosol | 16.79 | 24.35 |
| CDY24901 | Canola | cytosol | 20.36 | 24.05 |
| VIT_08s0058g01020.t01 | Wine grape | cytosol | 35.54 | 23.66 |
| KRG97647 | Soybean | plastid | 23.57 | 23.57 |
| CDY70964 | Canola | cytosol | 7.14 | 22.99 |
| AT2G40480.1 | Thale cress | cytosol | 20.71 | 22.39 |
| KRH73215 | Soybean | cytosol | 22.14 | 22.3 |
| OQU78181 | Sorghum | nucleus | 54.64 | 22.21 |
| CDY06986 | Canola | cytosol | 17.86 | 22.12 |
| Bra016990.1-P | Field mustard | cytosol | 17.86 | 22.12 |
| KRH14870 | Soybean | nucleus | 22.86 | 21.81 |
| CDX72151 | Canola | cytosol | 16.25 | 21.56 |
| Bra007760.1-P | Field mustard | nucleus | 12.32 | 21.5 |
| AT3G56270.1 | Thale cress | cytosol | 16.79 | 21.08 |
| CDY27228 | Canola | cytosol | 15.89 | 18.62 |
| Bra039972.1-P | Field mustard | cytosol | 8.21 | 18.4 |
| Bra007233.1-P | Field mustard | cytosol | 15.54 | 18.2 |
| CDY12396 | Canola | cytosol, endoplasmic reticulum, nucleus | 10.18 | 16.91 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G298300.1 | EnsemblPlantsGene:TraesCS1D01G298300 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF14 |
| PFAM:PF05701 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr1D:+:397067576..397070260
Molecular Weight (calculated)
62301.0 Da
IEP (calculated)
9.578
GRAVY (calculated)
-0.578
Length
560 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVAAHAQA GEALVLAAMR GRGEVDTSSQ FESVRQAVDR FGGGAVSPWR QPPSPPPPPL QLRPEEVELM KVEEQTVKVE MGLFVKESET FKVLKELEST
101: KQVIDDLKLQ IEKATSECGN AAIDHADTMK IHPLPKIEQK MDDHTGPLIQ SINTIQSPLA TLMKLNQAKA FLSMDTVKMF KCQIEEEKAS LERTRERVQL
201: NMEKASALEA ELSKTAAQLQ AAKDPKPVLE PYDIWLQMKQ LNAEKDKHRK MVEDSKLEIG ELTSTIEHTR SKAKTLQFRI VMAEKLKEAS RRGEAYALAE
301: MGKRRNVEDP ESATCDVTLS VEEHSKLLRE AEEAEVASRN RIDAAMQELD QANQGKAEVL ERVDEAMAAV ESSRKVLEEA LKREEAANKA KLAAEDALGR
401: LRSDQIILNW RPTGNINSNN AVKFKTSATP VTPRKAAGTG IYDVNGLSLV ATTPKSTKAM SIGQILSMKL DCEFETATTG KTAGKTASST KKKKVSLGQM
501: LSQKYEMYSP MRIDHDGASR KQFHPRRRRL GFVVYALLLA RQKHRKKRQQ ARASSCTKVV
101: KQVIDDLKLQ IEKATSECGN AAIDHADTMK IHPLPKIEQK MDDHTGPLIQ SINTIQSPLA TLMKLNQAKA FLSMDTVKMF KCQIEEEKAS LERTRERVQL
201: NMEKASALEA ELSKTAAQLQ AAKDPKPVLE PYDIWLQMKQ LNAEKDKHRK MVEDSKLEIG ELTSTIEHTR SKAKTLQFRI VMAEKLKEAS RRGEAYALAE
301: MGKRRNVEDP ESATCDVTLS VEEHSKLLRE AEEAEVASRN RIDAAMQELD QANQGKAEVL ERVDEAMAAV ESSRKVLEEA LKREEAANKA KLAAEDALGR
401: LRSDQIILNW RPTGNINSNN AVKFKTSATP VTPRKAAGTG IYDVNGLSLV ATTPKSTKAM SIGQILSMKL DCEFETATTG KTAGKTASST KKKKVSLGQM
501: LSQKYEMYSP MRIDHDGASR KQFHPRRRRL GFVVYALLLA RQKHRKKRQQ ARASSCTKVV
001: MAEFPEPGTV NPDSDLSNGR AEKPEIDTSA PFESVREAAT RFGGFGFWRP SLNKLPDASQ ENIQEPDIMG LKAQAFELQR ELIVKERETL EVLKELEATK
101: ATVLKLQQRN EAYEEDTLRE EVDSHIKPAG VVLKDLSQAK MNLCKIASIR ESVEQLKNKL NEERAALEKT RERLMEKSLK VFSLEEEEVR VRFAKEGQTG
201: EKDLGMLNEV QRLSRQAQEV KKTGENAELE VVKAMAETES TRDKIRTAKI RLVAARKMKE AAREAEAVAI AEIEAVTGSM NVGKAEAVTI SAEEYSVLAR
301: SARDAEEEAR KRVEDAMSRV EEANVSKKDV LKKVDEAAQE IETSKRVLEE AVERVDAANA SKIEAEEALR KWRSENGQRR RLSSSVNNTS KFKSRRETTT
401: RLMDVNGLHL TYDVVDGSSS SSTVPVLKPT MSIGQILSKK LLLAEDSDMN VANERRKMSL GQMLAKNSSS DKTVSKRSEG KENEKRTKTR KRKSFGFAKI
501: SVLLNKESKN KKKKKKIALN LR
101: ATVLKLQQRN EAYEEDTLRE EVDSHIKPAG VVLKDLSQAK MNLCKIASIR ESVEQLKNKL NEERAALEKT RERLMEKSLK VFSLEEEEVR VRFAKEGQTG
201: EKDLGMLNEV QRLSRQAQEV KKTGENAELE VVKAMAETES TRDKIRTAKI RLVAARKMKE AAREAEAVAI AEIEAVTGSM NVGKAEAVTI SAEEYSVLAR
301: SARDAEEEAR KRVEDAMSRV EEANVSKKDV LKKVDEAAQE IETSKRVLEE AVERVDAANA SKIEAEEALR KWRSENGQRR RLSSSVNNTS KFKSRRETTT
401: RLMDVNGLHL TYDVVDGSSS SSTVPVLKPT MSIGQILSKK LLLAEDSDMN VANERRKMSL GQMLAKNSSS DKTVSKRSEG KENEKRTKTR KRKSFGFAKI
501: SVLLNKESKN KKKKKKIALN LR
Arabidopsis Description
Plant protein of unknown function (DUF827) [Source:TAIR;Acc:AT2G38370]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.