CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016990.1-P	Field mustard	cytosol	99.78	99.78
CDX93176	Canola	cytosol	72.12	84.46
CDY24901	Canola	cytosol	68.58	65.4
CDY07602	Canola	nucleus	65.49	62.45
AT2G40480.1	Thale cress	cytosol	67.7	59.07
CDX72151	Canola	cytosol	39.38	42.18
CDY27228	Canola	cytosol	39.6	37.45
KRH31225	Soybean	cytosol	45.8	36.96
KRH73215	Soybean	cytosol	44.25	35.97
KRG97647	Soybean	plastid	43.58	35.18
KRH14870	Soybean	nucleus	44.03	33.9
VIT_13s0067g02400.t01	Wine grape	nucleus	39.38	33.33
CDY19552	Canola	mitochondrion	14.38	32.5
CDX78029	Canola	nucleus	28.1	30.98
GSMUA_Achr3P09860_001	Banana	nucleus	27.88	30.22
CDX73702	Canola	nucleus	26.77	29.3
PGSC0003DMT400074781	Potato	nucleus	31.64	28.71
Solyc06g050350.2.1	Tomato	nucleus	32.3	28.13
GSMUA_Achr8P21300_001	Banana	nucleus	26.55	28.04
CDY04348	Canola	nucleus	16.59	27.17
CDY07266	Canola	cytosol, mitochondrion	9.73	27.16
Os03t0339700-01	Rice	nucleus	31.86	26.47
CDY65893	Canola	nucleus	28.98	26.41
EER92305	Sorghum	nucleus	30.97	25.69
CDY07733	Canola	cytosol	18.36	24.78
Zm00001d047516_P001	Maize	nucleus	29.65	24.59
Os07t0677900-01	Rice	nucleus	27.88	24.28
EER97734	Sorghum	nucleus	30.53	23.88
Zm00001d007164_P001	Maize	nucleus	28.98	23.65
CDY18389	Canola	nucleus	26.33	23.56
CDY70507	Canola	cytosol, nucleus, plastid	22.12	23.09
TraesCS2A01G106600.1	Wheat	nucleus	30.53	22.85
GSMUA_Achr8P02810_001	Banana	mitochondrion	25.66	21.89
TraesCS2B01G124200.1	Wheat	nucleus	30.09	21.69
TraesCS2D01G107200.1	Wheat	nucleus	29.65	21.54
HORVU2Hr1G018380.4	Barley	nucleus	29.87	21.06
CDY11490	Canola	nucleus	11.73	20.0
CDY58310	Canola	nucleus	11.73	20.0
Os05t0476100-01	Rice	cytosol, nucleus, plastid	23.89	19.08
TraesCS1A01G299400.1	Wheat	cytosol	22.12	18.18
TraesCS1B01G309200.1	Wheat	cytosol	21.9	18.07
TraesCS1D01G298300.1	Wheat	nucleus	22.12	17.86
Zm00001d010610_P001	Maize	cytosol	21.24	17.24
CDY12396	Canola	cytosol, endoplasmic reticulum, nucleus	12.83	17.21
CDY70964	Canola	cytosol	6.42	16.67
HORVU1Hr1G070120.3	Barley	nucleus	22.57	16.5
OQU78181	Sorghum	nucleus	19.69	6.46

Protein Annotations

EnsemblPlants:CDY06986	EnsemblPlantsGene:GSBRNA2T00123294001	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF13
PFAM:PF05701	ProteinID:CDY06986	ProteinID:CDY06986.1	SEG:seg	UniParc:UPI0004EEC93D	MapMan:35.1

Description

BnaA04g23290D

Coordinates

chrLK031974:-:491481..493709

Molecular Weight (calculated)

51595.5 Da

IEP (calculated)

6.403

GRAVY (calculated)

-0.818

Length

452 amino acids

Sequence
(BLAST)

001: MAEEEHLNPV GVSQVPGIRR VGLRAEIDTS LPFGSVQEEV TRLGGRGYWV PFKLEDNYNG VGEFDIKRME EHAAELEKDL IVKELETLDV LEALGTTKRI
101: VEDLKRQLHQ ESLRSSAEQI KEMNNDGHSN HNPISPSPDL ILTELKQAKI NLGKTMDDLV MIQSSVESLN KKMKEEKKFL DNAREKLTYG FGGEVVSLAE
201: TPREQVKIDA EPTEETCLKQ QNKNCLRTAE MRLVAARKME EAAKAAEELA MAEITMLSSS AAYGESEEEE EDEFCFPEPP RSPFRTPRGF GNDHESRRGM
301: ILKKLEEATE GVREGKQALE DALNRVEIAN EKQLAAETAF RGWSKHSSPP MNQPQRSFFS HLNKPVVKSN VSMRDVLRRK QVPKEDDVHK RQSLEGETPR
401: RHVNLSQMLK ELKQDVKEEV REEKRFVTQR RKFGFIHITL PMHKQSKKKS SL

Best Arabidopsis Sequence Match ( AT2G40480.1 )
(BLAST)

001: MALAEEQHQN YHVAEAIPGT PGIHDVRIQP GSENSGFCVD PVGVSNVPGI RRVGLRAEID TSPPFGSVQE AVTRFGGRGY WVPFKLDDTF NGEFDIKRME
101: EHAAELEKDL IVKELETLDV LEALGSTKRI VEDLKRQLQQ EALRCSDQLS SDIKEMNDEH CHHNPMSSPD LILMELKQAK MNLGKTMDNL VVIQSSVESL
201: NKKMKEEKDF LEKTRAKLTY GFGGPVSLAE ELSRIKVKPQ VQDEPLREQV KMVAEADETG LNLQNKNSLR TAEMRLVAAR KMEEAAKAAE ALAIAEITML
301: SSNGESQDDD SEFCFPEPPR SPVTPRGLRI DNDFSTDKSS RRGILKKLEE ATEGVKQSKQ ALEAALNRVE IANVKQLAAE NAFRGWTKDS LKGDNFTPLN
401: HTRRSFFSHL NKHHEPLDIL PKPVLKSNIS MRDVLRRKQV PKEDVVAPQR QSLEGQIPRR NVNLSQMLKE LKQDVKFSAR GEKEEVHEEK QYVTQRRKFG
501: FIHITLPLQK QSKKKSSL

Arabidopsis Description

WEB family protein At2g40480 [Source:UniProtKB/Swiss-Prot;Acc:Q5XVC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.