Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G309200.1 | Wheat | cytosol | 89.82 | 90.15 |
| TraesCS1D01G298300.1 | Wheat | nucleus | 90.91 | 89.29 |
| HORVU1Hr1G070120.3 | Barley | nucleus | 84.73 | 75.4 |
| Os05t0476100-01 | Rice | cytosol, nucleus, plastid | 66.55 | 64.66 |
| Zm00001d010610_P001 | Maize | cytosol | 63.45 | 62.66 |
| GSMUA_Achr8P02810_001 | Banana | mitochondrion | 35.27 | 36.6 |
| KRG94824 | Soybean | cytosol | 29.27 | 33.68 |
| KRH76097 | Soybean | nucleus | 34.18 | 33.63 |
| KRH65464 | Soybean | nucleus | 34.18 | 33.57 |
| KRH40785 | Soybean | nucleus | 29.09 | 32.65 |
| KRH00407 | Soybean | nucleus | 33.45 | 32.17 |
| Bra017122.1-P | Field mustard | nucleus | 29.27 | 31.76 |
| PGSC0003DMT400068339 | Potato | nucleus | 32.91 | 31.75 |
| CDY18389 | Canola | nucleus | 29.09 | 31.68 |
| Solyc09g042710.2.1 | Tomato | nucleus | 32.73 | 31.41 |
| CDY70507 | Canola | cytosol, nucleus, plastid | 24.73 | 31.41 |
| CDY07266 | Canola | cytosol, mitochondrion | 8.91 | 30.25 |
| AT3G51720.1 | Thale cress | nucleus | 22.36 | 30.22 |
| CDY65893 | Canola | nucleus | 27.09 | 30.04 |
| CDX78029 | Canola | nucleus | 22.36 | 30.0 |
| TraesCS2A01G106600.1 | Wheat | nucleus | 32.91 | 29.97 |
| AT2G38370.2 | Thale cress | nucleus | 29.09 | 29.68 |
| CDX73702 | Canola | nucleus | 22.18 | 29.54 |
| Bra036780.1-P | Field mustard | nucleus | 22.0 | 29.51 |
| VIT_13s0067g02400.t01 | Wine grape | nucleus | 27.64 | 28.46 |
| CDY04348 | Canola | nucleus | 14.18 | 28.26 |
| CDY07733 | Canola | cytosol | 16.91 | 27.76 |
| Bra000057.1-P | Field mustard | nucleus | 24.36 | 27.46 |
| CDY19552 | Canola | mitochondrion | 9.82 | 27.0 |
| PGSC0003DMT400074781 | Potato | nucleus | 24.18 | 26.71 |
| Solyc06g050350.2.1 | Tomato | nucleus | 24.91 | 26.4 |
| CDY58310 | Canola | nucleus | 12.55 | 26.04 |
| CDY11490 | Canola | nucleus | 12.55 | 26.04 |
| KRH31225 | Soybean | cytosol | 25.27 | 24.82 |
| CDY70964 | Canola | cytosol | 7.64 | 24.14 |
| Bra000190.1-P | Field mustard | nucleus | 20.73 | 24.05 |
| CDY07602 | Canola | nucleus | 20.73 | 24.05 |
| KRG97647 | Soybean | plastid | 24.18 | 23.75 |
| CDY24901 | Canola | cytosol | 20.36 | 23.63 |
| CDX93176 | Canola | cytosol | 16.55 | 23.58 |
| VIT_08s0058g01020.t01 | Wine grape | cytosol | 35.64 | 23.31 |
| AT2G40480.1 | Thale cress | cytosol | 21.27 | 22.59 |
| KRH73215 | Soybean | cytosol | 22.55 | 22.3 |
| CDY06986 | Canola | cytosol | 18.18 | 22.12 |
| Bra016990.1-P | Field mustard | cytosol | 18.18 | 22.12 |
| OQU78181 | Sorghum | nucleus | 55.27 | 22.06 |
| KRH14870 | Soybean | nucleus | 23.27 | 21.81 |
| CDX72151 | Canola | cytosol | 16.55 | 21.56 |
| Bra007760.1-P | Field mustard | nucleus | 12.55 | 21.5 |
| AT3G56270.1 | Thale cress | cytosol | 17.09 | 21.08 |
| Bra039972.1-P | Field mustard | cytosol | 8.73 | 19.2 |
| CDY27228 | Canola | cytosol | 16.36 | 18.83 |
| Bra007233.1-P | Field mustard | cytosol | 16.0 | 18.41 |
| CDY12396 | Canola | cytosol, endoplasmic reticulum, nucleus | 10.18 | 16.62 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G299400.1 | EnsemblPlantsGene:TraesCS1A01G299400 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF14 |
| PFAM:PF05701 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr1A:+:494437454..494440412
Molecular Weight (calculated)
61320.5 Da
IEP (calculated)
9.501
GRAVY (calculated)
-0.623
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVAAHALA AMRGRGEVDT SSQFESVRQA VDRFGGGAVS PWRQPPSPPP PLQLRPEEVE LMKVEEQTVK VEMGLFVKES ETFKVLKELE STKQVIDDLK
101: LQIEKATSEC GNAATDHADT MKIHPPPDIE RKVDDHAEPL IQSINAIQSP LATLMKLNQA KAFLNMDTVK MFKCQIEEEK ASLERTRERV QLNIEKASAL
201: EAELSKTAAQ LQAAKDPKPA LEPYDIWLQM KQLNAEKDKH RKMVEDSKLE IGELTSTIEH TRSKAKTLQF RIVMADKLKE ASRRGEAFAL AAMGKRSNVE
301: DPESATSDVT LSVEEHSKLL REAEESEVAS RNRIDAAMQE LDQANQGKVE LLERVDEAMA AVESSRKVLE EALKREESAN KAKLAAEDAL RRLRSDQIIL
401: NWRPTGNSNS RNNSVKFKTS ATPATPRKVG TGIYDVNGLS LVATTPKSTK AMSIGQILSM KLDCEFETAT GKTTGKTASS AKKKEVSLGQ MLSQKYEMYS
501: PMRIDHDGAS RKQFQPRRRR LGFVVYALLL ARQKHRKRQQ ARASSCTKVV
101: LQIEKATSEC GNAATDHADT MKIHPPPDIE RKVDDHAEPL IQSINAIQSP LATLMKLNQA KAFLNMDTVK MFKCQIEEEK ASLERTRERV QLNIEKASAL
201: EAELSKTAAQ LQAAKDPKPA LEPYDIWLQM KQLNAEKDKH RKMVEDSKLE IGELTSTIEH TRSKAKTLQF RIVMADKLKE ASRRGEAFAL AAMGKRSNVE
301: DPESATSDVT LSVEEHSKLL REAEESEVAS RNRIDAAMQE LDQANQGKVE LLERVDEAMA AVESSRKVLE EALKREESAN KAKLAAEDAL RRLRSDQIIL
401: NWRPTGNSNS RNNSVKFKTS ATPATPRKVG TGIYDVNGLS LVATTPKSTK AMSIGQILSM KLDCEFETAT GKTTGKTASS AKKKEVSLGQ MLSQKYEMYS
501: PMRIDHDGAS RKQFQPRRRR LGFVVYALLL ARQKHRKRQQ ARASSCTKVV
001: MVVKTGFPIT DSSSSASMAE FPEPGTVNPD SDLSNGRAEK PEIDTSAPFE SVREAATRFG GFGFWRPSLN KLPDASQENI QEPDIMGLKA QAFELQRELI
101: VKERETLEVL KELEATKATV LKLQQRNEAY EEDTLREEVD SHIKPAGVVL KDLSQAKMNL CKIASIRESV EQLKNKLNEE RAALEKTRER LMEKSLKVFS
201: LEEEEVRVRF AKEGQTGEKD LGMLNEVQRL SRQAQEVKKT GENAELEVVK AMAETESTRD KIRTAKIRLV AARKMKEAAR EAEAVAIAEI EAVTGSMNVG
301: KAEAVTISAE EYSVLARSAR DAEEEARKRV EDAMSRVEEA NVSKKDVLKK VDEAAQEIET SKRVLEEAVE RVDAANASKI EAEEALRKWR SENGQRRRLS
401: SSVNNTSKFK SRRETTTRLM DVNGLHLTYD VVDGSSSSST VPVLKPTMSI GQILSKKLLL AEDSDMNVAN ERRKMSLGQM LAKNSSSDKT VSKRSEGKEN
501: EKRTKTRKRK SFGFAKISVL LNKESKNKKK KKKIALNLR
101: VKERETLEVL KELEATKATV LKLQQRNEAY EEDTLREEVD SHIKPAGVVL KDLSQAKMNL CKIASIRESV EQLKNKLNEE RAALEKTRER LMEKSLKVFS
201: LEEEEVRVRF AKEGQTGEKD LGMLNEVQRL SRQAQEVKKT GENAELEVVK AMAETESTRD KIRTAKIRLV AARKMKEAAR EAEAVAIAEI EAVTGSMNVG
301: KAEAVTISAE EYSVLARSAR DAEEEARKRV EDAMSRVEEA NVSKKDVLKK VDEAAQEIET SKRVLEEAVE RVDAANASKI EAEEALRKWR SENGQRRRLS
401: SSVNNTSKFK SRRETTTRLM DVNGLHLTYD VVDGSSSSST VPVLKPTMSI GQILSKKLLL AEDSDMNVAN ERRKMSLGQM LAKNSSSDKT VSKRSEGKEN
501: EKRTKTRKRK SFGFAKISVL LNKESKNKKK KKKIALNLR
Arabidopsis Description
Plant protein of unknown function (DUF827) [Source:TAIR;Acc:AT2G38370]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.