Factsheet for Solyc06g050350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc02g088000.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc09g010500.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56270.1	Solyc09g010500.2.1	AT2G04630.1	21798944
AT3G56270.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT3G56270.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT3G56270.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT3G56270.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT3G56270.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT3G56270.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT3G56270.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT3G56270.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT3G56270.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT3G56270.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT3G56270.1	Solyc02g088000.2.1	AT3G01180.1	21798944
AT3G56270.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT3G56270.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT3G56270.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT3G56270.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT3G56270.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT3G56270.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT3G56270.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074781	Potato	nucleus	86.51	90.16
VIT_13s0067g02400.t01	Wine grape	nucleus	36.22	35.21
GSMUA_Achr8P21300_001	Banana	nucleus	28.71	34.81
Solyc09g042710.2.1	Tomato	nucleus	37.38	33.86
GSMUA_Achr3P09860_001	Banana	nucleus	27.17	33.81
KRH31225	Soybean	cytosol	36.42	33.75
CDX93176	Canola	cytosol	24.66	33.16
Bra016990.1-P	Field mustard	cytosol	28.13	32.3
CDY06986	Canola	cytosol	28.13	32.3
KRG97647	Soybean	plastid	34.3	31.79
CDY24901	Canola	cytosol	28.52	31.22
Os03t0339700-01	Rice	nucleus	32.56	31.07
Bra000190.1-P	Field mustard	nucleus	27.75	30.38
CDY07602	Canola	nucleus	27.75	30.38
Os07t0677900-01	Rice	nucleus	30.06	30.06
KRH73215	Soybean	cytosol	31.79	29.68
AT2G40480.1	Thale cress	cytosol	29.09	29.15
KRH14870	Soybean	nucleus	32.56	28.79
EER92305	Sorghum	nucleus	30.06	28.62
GSMUA_Achr8P02810_001	Banana	mitochondrion	28.71	28.11
EER97734	Sorghum	nucleus	31.21	28.03
Zm00001d047516_P001	Maize	nucleus	28.9	27.52
TraesCS2A01G106600.1	Wheat	nucleus	31.6	27.15
Zm00001d007164_P001	Maize	nucleus	28.9	27.08
AT3G56270.1	Thale cress	cytosol	23.12	26.91
TraesCS2B01G124200.1	Wheat	nucleus	31.41	26.0
HORVU2Hr1G018380.4	Barley	nucleus	31.79	25.74
Os05t0476100-01	Rice	cytosol, nucleus, plastid	27.75	25.44
TraesCS2D01G107200.1	Wheat	nucleus	30.44	25.4
TraesCS1B01G309200.1	Wheat	cytosol	26.4	25.0
TraesCS1A01G299400.1	Wheat	cytosol	26.4	24.91
TraesCS1D01G298300.1	Wheat	nucleus	26.59	24.64
CDX72151	Canola	cytosol	19.85	24.41
Zm00001d010610_P001	Maize	cytosol	25.43	23.7
HORVU1Hr1G070120.3	Barley	nucleus	26.59	22.33
Bra007233.1-P	Field mustard	cytosol	19.27	20.92
CDY27228	Canola	cytosol	18.5	20.08
OQU78181	Sorghum	nucleus	21.97	8.27

Protein Annotations

EnsemblPlants:Solyc06g050350.2.1	EnsemblPlantsGene:Solyc06g050350.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008150	GO:GO:0009903	GO:GO:0009904	GO:GO:0009987	GO:GO:0016043
InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF4	PFAM:PF05701	SEG:seg
UniParc:UPI0002766940	UniProt:K4C5I0	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6:-:32962998..32965781

Molecular Weight (calculated)

59025.4 Da

IEP (calculated)

7.615

GRAVY (calculated)

-0.715

Length

519 amino acids

Sequence
(BLAST)

001: MAETKKIINP RVEIDTSPPF ESVKEAVDHF GGSGPWIPHH LLRLPPPDND SEVVDVGKME EQAVKFEKDL IVKEQEALNV LREVEEAKRF VEGLKVNLMQ
101: EVSEFVSSPG VHPENQIPNL NELSAENLSL CPLQSPGHVL MELNRAKLDL NKMSTDLTVI RSSVETLNKK MKKEKVILDR SSQMKSLDSA AGFSIEEKNT
201: MNNELLQLSF EADQFKKMAE ASRYEVMKAM SEIERTKASI RMAEMRLHAA KKMEEAAKAV EAIAFAERKA LLNGKKSSTV VQHTTEGITI SYEEYYALAR
301: KAQQAEELCK TKFVDTNTMH RTNEANQSEV SITKKMEETT KEIRHNRSTL EEALDNEDGT QRSRLIEQDG FYRERSEHTQ LHYSGHNTSV KSKFRNPQSS
401: LTSHGNPRLA DDNEADNVND KSVPVFRSSI SIGDILSRKL ILRDDHIVVG KHMESHTERK HVSFSQMLRE QSGIILNPTK AMKEGDVHKQ FITHKKKFGF
501: IQVPLPRQNK KKTQPLNMR

Best Arabidopsis Sequence Match ( AT2G38370.2 )
(BLAST)

001: MVVKTGFPIT DSSSSASMAE FPEPGTVNPD SDLSNGRAEK PEIDTSAPFE SVREAATRFG GFGFWRPSLN KLPDASQENI QEPDIMGLKA QAFELQRELI
101: VKERETLEVL KELEATKATV LKLQQRNEAY EEDTLREEVD SHIKPAGVVL KDLSQAKMNL CKIASIRESV EQLKNKLNEE RAALEKTRER LMEKSLKVFS
201: LEEEEVRVRF AKEGQTGEKD LGMLNEVQRL SRQAQEVKKT GENAELEVVK AMAETESTRD KIRTAKIRLV AARKMKEAAR EAEAVAIAEI EAVTGSMNVG
301: KAEAVTISAE EYSVLARSAR DAEEEARKRV EDAMSRVEEA NVSKKDVLKK VDEAAQEIET SKRVLEEAVE RVDAANASKI EAEEALRKWR SENGQRRRLS
401: SSVNNTSKFK SRRETTTRLM DVNGLHLTYD VVDGSSSSST VPVLKPTMSI GQILSKKLLL AEDSDMNVAN ERRKMSLGQM LAKNSSSDKT VSKRSEGKEN
501: EKRTKTRKRK SFGFAKISVL LNKESKNKKK KKKIALNLR

Arabidopsis Description

Plant protein of unknown function (DUF827) [Source:TAIR;Acc:AT2G38370]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.