Factsheet for Solyc09g010500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008230.2.1
Solyc03g006800.1.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g116320.2.1
Solyc04g009180.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04630.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT2G04630.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT2G04630.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT2G04630.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT2G04630.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT2G04630.1	Solyc01g008230.2.1	AT5G08330.1	21798944
AT2G04630.1	Solyc04g009180.1.1	AT5G08330.1	21798944
AT2G04630.1	Solyc03g006800.1.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023048	Potato	nucleus	97.92	97.92
VIT_12s0028g01210.t01	Wine grape	nucleus	80.56	82.27
GSMUA_Achr3P18200_001	Banana	nucleus	79.86	80.42
VIT_16s0100g00530.t01	Wine grape	nucleus	79.17	80.28
GSMUA_Achr4P27190_001	Banana	nucleus	77.78	78.87
Os07t0463100-01	Rice	nucleus	77.08	78.17
Os03t0586600-01	Rice	nucleus	77.08	78.17
KRG91449	Soybean	nucleus	77.08	78.17
AT2G04630.1	Thale cress	nucleus	77.78	77.78
Zm00001d033099_P001	Maize	nucleus	76.39	77.46
Zm00001d013780_P001	Maize	nucleus	76.39	77.46
CDY30836	Canola	nucleus	77.08	77.08
CDY30291	Canola	nucleus	77.08	77.08
Bra025617.1-P	Field mustard	nucleus	77.08	77.08
EER96335	Sorghum	nucleus	75.69	76.22
CDY20025	Canola	nucleus	75.69	75.69
CDY00134	Canola	nucleus	75.69	75.69
Bra039057.1-P	Field mustard	nucleus	75.69	75.69
AT5G51940.1	Thale cress	nucleus	75.69	75.69
HORVU2Hr1G030940.1	Barley	nucleus	74.31	75.35
TraesCS2B01G194500.1	Wheat	nucleus	74.31	75.35
TraesCS2D01G175800.1	Wheat	nucleus	74.31	75.35
KRH35367	Soybean	nucleus	72.92	71.92
KXG38092	Sorghum	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	72.22	70.75
Os08t0426000-00	Rice	nucleus	38.89	18.18

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.1.6.4	Gene3D:3.90.940.10	InterPro:DNA-dir_RNA_polK_14-18kDa_CS	GO:GO:0001054
GO:GO:0001055	GO:GO:0001056	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005665	GO:GO:0005666	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139
GO:GO:0006351	GO:GO:0006360	GO:GO:0006366	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR012293	UniProt:K4CR77	HAMAP:MF_00192
PFAM:PF01192	PIRSF:PIRSF000778	PIRSF:PIRSF500154	ScanProsite:PS01111	PANTHER:PTHR10773	PANTHER:PTHR10773:SF14
InterPro:Pol_omega/K/RPB6	InterPro:RNAP_RPB6_omega	InterPro:RPB6	InterPro:RPB6/omega_like_sf	InterPro:RpoK/Rpb6	SMART:SM01409
SUPFAM:SSF63562	EnsemblPlantsGene:Solyc09g010500.2	EnsemblPlants:Solyc09g010500.2.1	UniParc:UPI000276AD12	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:3879837..3882611

Molecular Weight (calculated)

16516.1 Da

IEP (calculated)

3.914

GRAVY (calculated)

-1.029

Length

144 amino acids

Sequence
(BLAST)

001: MADDDYDMDG GYVDEPMDPE PDEGAEIEED NGNNDDIPDP LMGEGEEKTE QQEPVERPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRERKI PFTIRRYLPD GSYEDWGVDE LIVEDSWKRQ VGGT

Best Arabidopsis Sequence Match ( AT2G04630.1 )
(BLAST)

001: MADDDYNEVD DLGYEDEPAE PEIEEGVEED ADIKENDDVN VDPLETEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD MSYEEWGVDE LIVEDSWKRQ VGGD

Arabidopsis Description

NRPB6BDNA-directed RNA polymerases II and V subunit 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ96]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.