CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EER88227
EER99208
EES07255
EES07800
OQU80770
OQU85473

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04630.1	EER88112	AT3G47620.1	21798944
AT2G04630.1	EES07255	AT3G47620.1	21798944
AT2G04630.1	EES07800	AT5G08330.1	21798944
AT2G04630.1	EER99208	AT5G51910.1	21798944
AT2G04630.1	OQU80770	AT5G51910.1	21798944
AT2G04630.1	EER88227	AT5G57660.1	21798944
AT2G04630.1	OQU85473	AT5G57660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P27190_001	Banana	nucleus	88.11	88.73
Os07t0463100-01	Rice	nucleus	87.41	88.03
GSMUA_Achr3P18200_001	Banana	nucleus	87.41	87.41
VIT_12s0028g01210.t01	Wine grape	nucleus	82.52	83.69
VIT_16s0100g00530.t01	Wine grape	nucleus	81.82	82.39
KRG91449	Soybean	nucleus	77.62	78.17
KXG38092	Sorghum	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	79.72	77.55
PGSC0003DMT400023048	Potato	nucleus	76.92	76.39
Solyc09g010500.2.1	Tomato	nucleus	76.22	75.69
AT2G04630.1	Thale cress	nucleus	76.22	75.69
AT5G51940.1	Thale cress	nucleus	75.52	75.0
CDY20025	Canola	nucleus	74.83	74.31
CDY30291	Canola	nucleus	74.83	74.31
CDY30836	Canola	nucleus	74.83	74.31
CDY00134	Canola	nucleus	74.83	74.31
Bra039057.1-P	Field mustard	nucleus	74.83	74.31
Bra025617.1-P	Field mustard	nucleus	74.83	74.31
KRH35367	Soybean	nucleus	74.13	72.6
Os08t0426000-00	Rice	nucleus	44.76	20.78

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.1.6.4	Gene3D:3.90.940.10	EntrezGene:8059770	UniProt:C5X5S2
InterPro:DNA-dir_RNA_polK_14-18kDa_CS	EnsemblPlants:EER96335	ProteinID:EER96335	ProteinID:EER96335.1	GO:GO:0001054	GO:GO:0001055
GO:GO:0001056	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005665	GO:GO:0005666	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139	GO:GO:0006351
GO:GO:0006360	GO:GO:0006366	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	InterPro:IPR012293	HAMAP:MF_00192	PFAM:PF01192	PIRSF:PIRSF000778
PIRSF:PIRSF500154	ScanProsite:PS01111	PANTHER:PTHR10773	PANTHER:PTHR10773:SF14	InterPro:Pol_omega/K/RPB6	InterPro:RNAP_RPB6_omega
InterPro:RPB6	InterPro:RPB6/omega_like_sf	InterPro:RpoK/Rpb6	SMART:SM01409	EnsemblPlantsGene:SORBI_3002G129200	SUPFAM:SSF63562
unigene:Sbi.9340	UniParc:UPI0001A8358E	RefSeq:XP_002459814.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:18009064..18016782

Molecular Weight (calculated)

16496.0 Da

IEP (calculated)

3.956

GRAVY (calculated)

-0.999

Length

143 amino acids

Sequence
(BLAST)

001: MADDDYNEMD MGYEDEPPEA EIEEGAEEEL ENNNEDTPDD VVGAEAEDKE QEKIARARKT TKYMTKYERA RILGTRALQI SMNAPVMVEL EGETDPLEIA
101: MKELRARKIP FTIRRYLPDG SYEDWSVDEL IVEDSWKRQV GGE

Best Arabidopsis Sequence Match ( AT5G51940.1 )
(BLAST)

001: MADEDYNDVD DLGYEDEPAE PEIEEGVEED VEMKENDDVN GEPIEAEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD

Arabidopsis Description

NRPB6ANRPE6A [Source:UniProtKB/TrEMBL;Acc:A0A178UA32]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.