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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 4
  • mitochondrion 2
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os07t0463100-01 Rice nucleus 24.03 52.11
Os03t0586600-01 Rice nucleus 20.78 45.07
EER96335 Sorghum nucleus 20.78 44.76
GSMUA_Achr4P27190_001 Banana nucleus 20.45 44.37
GSMUA_Achr3P18200_001 Banana nucleus 19.48 41.96
VIT_16s0100g00530.t01 Wine grape nucleus 18.51 40.14
PGSC0003DMT400023048 Potato nucleus 18.51 39.58
Solyc09g010500.2.1 Tomato nucleus 18.18 38.89
KRG91449 Soybean nucleus 17.86 38.73
VIT_12s0028g01210.t01 Wine grape nucleus 17.21 37.59
AT5G51940.1 Thale cress nucleus 17.21 36.81
KRH35367 Soybean nucleus 17.21 36.3
CDY20025 Canola nucleus 16.88 36.11
CDY00134 Canola nucleus 16.88 36.11
Bra039057.1-P Field mustard nucleus 16.88 36.11
AT2G04630.1 Thale cress nucleus 16.88 36.11
CDY30291 Canola nucleus 16.56 35.42
CDY30836 Canola nucleus 16.23 34.72
Bra025617.1-P Field mustard nucleus 16.23 34.72
Protein Annotations
Description
Similar to DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide. (Os08t0426000-00)
Coordinates
chr8:+:20468337..20470477
Molecular Weight (calculated)
33586.0 Da
IEP (calculated)
11.900
GRAVY (calculated)
-0.712
Length
308 amino acids
Sequence
(BLAST)
001: PTHHQNPSRR RPIPLPLPAL SLSLSHAVTG RRRLRLPLAP SPLPTAAPPP PPGAAASAPA AVAASPSPAI SASRHPHRRP PPPSRHHRHR VHPSLPPPPL
101: SSSPSAVGAT SASLRRCCRR RALPQHRRPL PPPSPSVAAA SFAAITNGRC SALRCRCHRR NGSGDRTDIF GFSSFLPPLP LTSSPPSEAL AKRLTRALRR
201: RQRRRRSEHH GGGRLQRHGY GLCGLFTFSE LEGAEEEPEN NNEDAVDDVV GAEDDREQEK TARPWKTSKY MTKYERARIL STRALQISMN APVMVELEGG
301: TYPLEVNS
Best Arabidopsis Sequence Match ( AT5G51940.1 )
(BLAST)
001: MADEDYNDVD DLGYEDEPAE PEIEEGVEED VEMKENDDVN GEPIEAEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
Arabidopsis Description
NRPB6ANRPE6A [Source:UniProtKB/TrEMBL;Acc:A0A178UA32]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.