Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os07t0463100-01 | Rice | nucleus | 24.03 | 52.11 |
Os03t0586600-01 | Rice | nucleus | 20.78 | 45.07 |
EER96335 | Sorghum | nucleus | 20.78 | 44.76 |
GSMUA_Achr4P27190_001 | Banana | nucleus | 20.45 | 44.37 |
GSMUA_Achr3P18200_001 | Banana | nucleus | 19.48 | 41.96 |
VIT_16s0100g00530.t01 | Wine grape | nucleus | 18.51 | 40.14 |
PGSC0003DMT400023048 | Potato | nucleus | 18.51 | 39.58 |
Solyc09g010500.2.1 | Tomato | nucleus | 18.18 | 38.89 |
KRG91449 | Soybean | nucleus | 17.86 | 38.73 |
VIT_12s0028g01210.t01 | Wine grape | nucleus | 17.21 | 37.59 |
AT5G51940.1 | Thale cress | nucleus | 17.21 | 36.81 |
KRH35367 | Soybean | nucleus | 17.21 | 36.3 |
CDY20025 | Canola | nucleus | 16.88 | 36.11 |
CDY00134 | Canola | nucleus | 16.88 | 36.11 |
Bra039057.1-P | Field mustard | nucleus | 16.88 | 36.11 |
AT2G04630.1 | Thale cress | nucleus | 16.88 | 36.11 |
CDY30291 | Canola | nucleus | 16.56 | 35.42 |
CDY30836 | Canola | nucleus | 16.23 | 34.72 |
Bra025617.1-P | Field mustard | nucleus | 16.23 | 34.72 |
Protein Annotations
KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:3.90.940.10 | MapMan:35.1 | UniProt:A0A0N7KPV9 | ProteinID:BAT05506.1 |
InterPro:DNA-dir_RNA_polK_14-18kDa_CS | GO:GO:0000166 | GO:GO:0001054 | GO:GO:0001055 | GO:GO:0001056 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003774 | GO:GO:0003777 | GO:GO:0003824 | GO:GO:0003899 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005665 | GO:GO:0005666 | GO:GO:0005730 | GO:GO:0005736 |
GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006360 | GO:GO:0006366 | GO:GO:0006383 | GO:GO:0007018 |
GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
GO:GO:0016787 | InterPro:IPR012293 | EnsemblPlantsGene:Os08g0426000 | EnsemblPlants:Os08t0426000-00 | PFAM:PF01192 | ScanProsite:PS01111 |
InterPro:Pol_omega/K/RPB6 | InterPro:RNAP_RPB6_omega | InterPro:RPB6/omega_like_sf | SUPFAM:SSF63562 | UniParc:UPI000393B646 | SEG:seg |
Description
Similar to DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide. (Os08t0426000-00)
Coordinates
chr8:+:20468337..20470477
Molecular Weight (calculated)
33586.0 Da
IEP (calculated)
11.900
GRAVY (calculated)
-0.712
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: PTHHQNPSRR RPIPLPLPAL SLSLSHAVTG RRRLRLPLAP SPLPTAAPPP PPGAAASAPA AVAASPSPAI SASRHPHRRP PPPSRHHRHR VHPSLPPPPL
101: SSSPSAVGAT SASLRRCCRR RALPQHRRPL PPPSPSVAAA SFAAITNGRC SALRCRCHRR NGSGDRTDIF GFSSFLPPLP LTSSPPSEAL AKRLTRALRR
201: RQRRRRSEHH GGGRLQRHGY GLCGLFTFSE LEGAEEEPEN NNEDAVDDVV GAEDDREQEK TARPWKTSKY MTKYERARIL STRALQISMN APVMVELEGG
301: TYPLEVNS
101: SSSPSAVGAT SASLRRCCRR RALPQHRRPL PPPSPSVAAA SFAAITNGRC SALRCRCHRR NGSGDRTDIF GFSSFLPPLP LTSSPPSEAL AKRLTRALRR
201: RQRRRRSEHH GGGRLQRHGY GLCGLFTFSE LEGAEEEPEN NNEDAVDDVV GAEDDREQEK TARPWKTSKY MTKYERARIL STRALQISMN APVMVELEGG
301: TYPLEVNS
001: MADEDYNDVD DLGYEDEPAE PEIEEGVEED VEMKENDDVN GEPIEAEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
Arabidopsis Description
NRPB6ANRPE6A [Source:UniProtKB/TrEMBL;Acc:A0A178UA32]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.