Factsheet for Os07t0463100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0747400-01
Os02t0828566-01
Os03t0422702-00
Os06t0226700-01
Os06t0275000-01
Os08t0544800-01
Os09t0521300-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04630.1	Os02t0747400-01	AT3G47620.1	21798944
AT2G04630.1	Os06t0226700-01	AT3G47620.1	21798944
AT2G04630.1	Os02t0828566-01	AT5G08330.1	21798944
AT2G04630.1	Os03t0422702-00	AT5G08330.1	21798944
AT2G04630.1	Os08t0544800-01	AT5G51910.1	21798944
AT2G04630.1	Os09t0521300-00	AT5G51910.1	21798944
AT2G04630.1	Os06t0275000-01	AT5G57660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0586600-01	Rice	nucleus	90.85	90.85
EER96335	Sorghum	nucleus	88.03	87.41
GSMUA_Achr4P27190_001	Banana	nucleus	87.32	87.32
GSMUA_Achr3P18200_001	Banana	nucleus	85.21	84.62
VIT_16s0100g00530.t01	Wine grape	nucleus	81.69	81.69
VIT_12s0028g01210.t01	Wine grape	nucleus	80.99	81.56
KRG91449	Soybean	nucleus	79.58	79.58
PGSC0003DMT400023048	Potato	nucleus	78.87	77.78
Solyc09g010500.2.1	Tomato	nucleus	78.17	77.08
AT5G51940.1	Thale cress	nucleus	77.46	76.39
CDY20025	Canola	nucleus	76.76	75.69
CDY30291	Canola	nucleus	76.76	75.69
CDY00134	Canola	nucleus	76.76	75.69
Bra039057.1-P	Field mustard	nucleus	76.76	75.69
AT2G04630.1	Thale cress	nucleus	76.76	75.69
CDY30836	Canola	nucleus	75.35	74.31
Bra025617.1-P	Field mustard	nucleus	75.35	74.31
KRH35367	Soybean	nucleus	75.35	73.29
Os08t0426000-00	Rice	nucleus	52.11	24.03

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.1.6.4	Gene3D:3.90.940.10	EntrezGene:4343168	EMBL:AK121807
ProteinID:BAC07023.1	ProteinID:BAF21496.1	ProteinID:BAT01380.1	InterPro:DNA-dir_RNA_polK_14-18kDa_CS	GO:GO:0001054	GO:GO:0001055
GO:GO:0001056	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005665	GO:GO:0005666	GO:GO:0005730	GO:GO:0005736	GO:GO:0006139	GO:GO:0006351
GO:GO:0006360	GO:GO:0006366	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	InterPro:IPR012293	HAMAP:MF_00192	EnsemblPlantsGene:Os07g0463100	EnsemblPlants:Os07t0463100-01
PFAM:PF01192	PIRSF:PIRSF000778	PIRSF:PIRSF500154	ScanProsite:PS01111	PANTHER:PTHR10773	PANTHER:PTHR10773:SF14
InterPro:Pol_omega/K/RPB6	UniProt:Q8LI69	InterPro:RNAP_RPB6_omega	InterPro:RPB6	InterPro:RPB6/omega_like_sf	InterPro:RpoK/Rpb6
SMART:SM01409	SUPFAM:SSF63562	UniParc:UPI00000AA938	RefSeq:XP_015644995.1	SEG:seg	:

Description

RNA polymerase subunit, RPB6/omega domain containing protein. (Os07t0463100-01)

Coordinates

chr7:-:16290024..16293442

Molecular Weight (calculated)

16290.8 Da

IEP (calculated)

3.969

GRAVY (calculated)

-1.058

Length

142 amino acids

Sequence
(BLAST)

001: MAEDDYNDMD MGYEDEPPEP EIEEGAEEEP ENNNEDAVDD VVGAEDDKEQ EKTARPRKTS KYMTKYERAR ILGTRALQIS MNAPVMVELE GETDPLEIAM
101: KELRARKIPF TIRRYLPDGS YEDWGVDELI VEDSWKRQVG GG

Best Arabidopsis Sequence Match ( AT5G51940.1 )
(BLAST)

001: MADEDYNDVD DLGYEDEPAE PEIEEGVEED VEMKENDDVN GEPIEAEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD

Arabidopsis Description

NRPB6ANRPE6A [Source:UniProtKB/TrEMBL;Acc:A0A178UA32]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.