CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20025	Canola	nucleus	100.0	100.0
Bra039057.1-P	Field mustard	nucleus	100.0	100.0
CDY30291	Canola	nucleus	90.28	90.28
CDY30836	Canola	nucleus	90.28	90.28
KRG91449	Soybean	nucleus	82.64	83.8
GSMUA_Achr4P27190_001	Banana	nucleus	81.25	82.39
GSMUA_Achr3P18200_001	Banana	nucleus	79.86	80.42
VIT_16s0100g00530.t01	Wine grape	nucleus	79.17	80.28
VIT_12s0028g01210.t01	Wine grape	nucleus	78.47	80.14
Os03t0586600-01	Rice	nucleus	78.47	79.58
Zm00001d013780_P001	Maize	nucleus	76.39	77.46
Zm00001d033099_P001	Maize	nucleus	76.39	77.46
KRH35367	Soybean	nucleus	78.47	77.4
Os07t0463100-01	Rice	nucleus	75.69	76.76
TraesCS2B01G194500.1	Wheat	nucleus	75.69	76.76
TraesCS2D01G175800.1	Wheat	nucleus	75.69	76.76
HORVU2Hr1G030940.1	Barley	nucleus	75.0	76.06
PGSC0003DMT400023048	Potato	nucleus	75.69	75.69
Solyc09g010500.2.1	Tomato	nucleus	75.69	75.69
EER96335	Sorghum	nucleus	74.31	74.83
KXG38092	Sorghum	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	72.22	70.75
Os08t0426000-00	Rice	nucleus	36.11	16.88

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.1.6.4	Gene3D:3.90.940.10	GO:A0A078EH82	UniProt:A0A078EH82
EnsemblPlants:CDY00134	ProteinID:CDY00134	ProteinID:CDY00134.1	ProteinID:CDY20025.1	InterPro:DNA-dir_RNA_polK_14-18kDa_CS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005665	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
EnsemblPlantsGene:GSBRNA2T00109642001	InterPro:IPR012293	HAMAP:MF_00192	PFAM:PF01192	PIRSF:PIRSF000778	PIRSF:PIRSF500154
ScanProsite:PS01111	PANTHER:PTHR10773	PANTHER:PTHR10773:SF14	InterPro:Pol_omega/K/RPB6	InterPro:RNAP_RPB6_omega	InterPro:RPB6
InterPro:RPB6/omega_like_sf	InterPro:RpoK/Rpb6	SMART:SM01409	SUPFAM:SSF63562	UniParc:UPI0002541BA7	SEG:seg

Description

BnaC09g01670DBnaA09g02260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EH82]

Coordinates

chrLK031916:-:968932..971095

Molecular Weight (calculated)

16583.1 Da

IEP (calculated)

3.886

GRAVY (calculated)

-0.938

Length

144 amino acids

Sequence
(BLAST)

001: MADDDYQDVD DLGYEDEPAE PEIEEGVEDD AEMKENDDVD GEPIEAEDKV EEEAVPRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD

Best Arabidopsis Sequence Match ( AT5G51940.1 )
(BLAST)

001: MADEDYNDVD DLGYEDEPAE PEIEEGVEED VEMKENDDVN GEPIEAEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD

Arabidopsis Description

NRPB6ANRPE6A [Source:UniProtKB/TrEMBL;Acc:A0A178UA32]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.