Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00134 | Canola | nucleus | 100.0 | 100.0 |
| CDY20025 | Canola | nucleus | 100.0 | 100.0 |
| Bra025617.1-P | Field mustard | nucleus | 90.28 | 90.28 |
| KRG91449 | Soybean | nucleus | 82.64 | 83.8 |
| GSMUA_Achr4P27190_001 | Banana | nucleus | 81.25 | 82.39 |
| GSMUA_Achr3P18200_001 | Banana | nucleus | 79.86 | 80.42 |
| VIT_16s0100g00530.t01 | Wine grape | nucleus | 79.17 | 80.28 |
| VIT_12s0028g01210.t01 | Wine grape | nucleus | 78.47 | 80.14 |
| Os03t0586600-01 | Rice | nucleus | 78.47 | 79.58 |
| Zm00001d013780_P001 | Maize | nucleus | 76.39 | 77.46 |
| Zm00001d033099_P001 | Maize | nucleus | 76.39 | 77.46 |
| KRH35367 | Soybean | nucleus | 78.47 | 77.4 |
| Os07t0463100-01 | Rice | nucleus | 75.69 | 76.76 |
| TraesCS2B01G194500.1 | Wheat | nucleus | 75.69 | 76.76 |
| TraesCS2D01G175800.1 | Wheat | nucleus | 75.69 | 76.76 |
| HORVU2Hr1G030940.1 | Barley | nucleus | 75.0 | 76.06 |
| PGSC0003DMT400023048 | Potato | nucleus | 75.69 | 75.69 |
| Solyc09g010500.2.1 | Tomato | nucleus | 75.69 | 75.69 |
| EER96335 | Sorghum | nucleus | 74.31 | 74.83 |
| KXG38092 | Sorghum | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 72.22 | 70.75 |
| Os08t0426000-00 | Rice | nucleus | 36.11 | 16.88 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.6.4 | Gene3D:3.90.940.10 | EnsemblPlantsGene:Bra039057 | EnsemblPlants:Bra039057.1 |
| EnsemblPlants:Bra039057.1-P | InterPro:DNA-dir_RNA_polK_14-18kDa_CS | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005665 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR012293 | UniProt:M4FD87 | HAMAP:MF_00192 |
| PFAM:PF01192 | PIRSF:PIRSF000778 | PIRSF:PIRSF500154 | ScanProsite:PS01111 | PANTHER:PTHR10773 | PANTHER:PTHR10773:SF14 |
| InterPro:Pol_omega/K/RPB6 | InterPro:RNAP_RPB6_omega | InterPro:RPB6 | InterPro:RPB6/omega_like_sf | InterPro:RpoK/Rpb6 | SMART:SM01409 |
| SUPFAM:SSF63562 | UniParc:UPI0002541BA7 | SEG:seg | : | : | : |
Description
AT5G51940 (E=1e-057) NRPB6A, NRPD6A, NRPE6A | NRPB6A; DNA binding / DNA-directed RNA polymerase
Coordinates
chrA09:+:1346997..1348137
Molecular Weight (calculated)
16583.1 Da
IEP (calculated)
3.886
GRAVY (calculated)
-0.938
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDDYQDVD DLGYEDEPAE PEIEEGVEDD AEMKENDDVD GEPIEAEDKV EEEAVPRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
001: MADEDYNDVD DLGYEDEPAE PEIEEGVEED VEMKENDDVN GEPIEAEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
Arabidopsis Description
NRPB6ANRPE6A [Source:UniProtKB/TrEMBL;Acc:A0A178UA32]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.