Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P27190_001 | Banana | nucleus | 95.8 | 96.48 |
| TraesCS2D01G175800.1 | Wheat | nucleus | 89.51 | 90.14 |
| TraesCS2B01G194500.1 | Wheat | nucleus | 89.51 | 90.14 |
| HORVU2Hr1G030940.1 | Barley | nucleus | 88.81 | 89.44 |
| Os03t0586600-01 | Rice | nucleus | 88.81 | 89.44 |
| VIT_12s0028g01210.t01 | Wine grape | nucleus | 87.41 | 88.65 |
| Zm00001d033099_P001 | Maize | nucleus | 87.41 | 88.03 |
| Zm00001d013780_P001 | Maize | nucleus | 87.41 | 88.03 |
| VIT_16s0100g00530.t01 | Wine grape | nucleus | 87.41 | 88.03 |
| EER96335 | Sorghum | nucleus | 87.41 | 87.41 |
| Os07t0463100-01 | Rice | nucleus | 84.62 | 85.21 |
| KRG91449 | Soybean | nucleus | 82.52 | 83.1 |
| PGSC0003DMT400023048 | Potato | nucleus | 81.12 | 80.56 |
| AT5G51940.1 | Thale cress | nucleus | 80.42 | 79.86 |
| Solyc09g010500.2.1 | Tomato | nucleus | 80.42 | 79.86 |
| CDY20025 | Canola | nucleus | 80.42 | 79.86 |
| CDY00134 | Canola | nucleus | 80.42 | 79.86 |
| Bra039057.1-P | Field mustard | nucleus | 80.42 | 79.86 |
| AT2G04630.1 | Thale cress | nucleus | 80.42 | 79.86 |
| KXG38092 | Sorghum | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 81.12 | 78.91 |
| CDY30836 | Canola | nucleus | 78.32 | 77.78 |
| CDY30291 | Canola | nucleus | 78.32 | 77.78 |
| Bra025617.1-P | Field mustard | nucleus | 78.32 | 77.78 |
| KRH35367 | Soybean | nucleus | 78.32 | 76.71 |
| Os08t0426000-00 | Rice | nucleus | 41.96 | 19.48 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.6.4 | Gene3D:3.90.940.10 | InterPro:DNA-dir_RNA_polK_14-18kDa_CS | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005665 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| EnsemblPlantsGene:GSMUA_Achr3G18200_001 | EnsemblPlants:GSMUA_Achr3P18200_001 | EnsemblPlants:GSMUA_Achr3T18200_001 | InterPro:IPR012293 | UniProt:M0SFN6 | HAMAP:MF_00192 |
| PFAM:PF01192 | PIRSF:PIRSF000778 | PIRSF:PIRSF500154 | ScanProsite:PS01111 | PANTHER:PTHR10773 | PANTHER:PTHR10773:SF14 |
| InterPro:Pol_omega/K/RPB6 | InterPro:RNAP_RPB6_omega | InterPro:RPB6 | InterPro:RPB6/omega_like_sf | InterPro:RpoK/Rpb6 | SMART:SM01409 |
| SUPFAM:SSF63562 | UniParc:UPI0002962282 | SEG:seg | : | : | : |
Description
DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G18200_001]
Coordinates
chr3:-:19676574..19686679
Molecular Weight (calculated)
16634.1 Da
IEP (calculated)
3.891
GRAVY (calculated)
-1.140
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDDYDDVD MGYEDEPPEP EIEEGVEEDQ ENNNEDMPDD VVGAEGEEKE QERVERPRKT SKYMTKYERA RILGTRALQI SMNAPVMVEL EGETDPLEIA
101: MKELRERKIP FTIRRYLPDG SYEDWGVDEL IVEDSWKRQV GGD
101: MKELRERKIP FTIRRYLPDG SYEDWGVDEL IVEDSWKRQV GGD
001: MADEDYNDVD DLGYEDEPAE PEIEEGVEED VEMKENDDVN GEPIEAEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
Arabidopsis Description
NRPB6ANRPE6A [Source:UniProtKB/TrEMBL;Acc:A0A178UA32]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.