Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- nucleus 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033099_P001 | Maize | nucleus | 84.35 | 87.32 |
| Zm00001d013780_P001 | Maize | nucleus | 83.67 | 86.62 |
| Os03t0586600-01 | Rice | nucleus | 80.27 | 83.1 |
| TraesCS2D01G175800.1 | Wheat | nucleus | 79.59 | 82.39 |
| TraesCS2B01G194500.1 | Wheat | nucleus | 79.59 | 82.39 |
| HORVU2Hr1G030940.1 | Barley | nucleus | 78.91 | 81.69 |
| GSMUA_Achr4P27190_001 | Banana | nucleus | 78.91 | 81.69 |
| GSMUA_Achr3P18200_001 | Banana | nucleus | 78.91 | 81.12 |
| EER96335 | Sorghum | nucleus | 77.55 | 79.72 |
| VIT_12s0028g01210.t01 | Wine grape | nucleus | 74.83 | 78.01 |
| VIT_16s0100g00530.t01 | Wine grape | nucleus | 74.83 | 77.46 |
| KRG91449 | Soybean | nucleus | 72.11 | 74.65 |
| PGSC0003DMT400023048 | Potato | nucleus | 71.43 | 72.92 |
| KRH35367 | Soybean | nucleus | 72.11 | 72.6 |
| CDY20025 | Canola | nucleus | 70.75 | 72.22 |
| Solyc09g010500.2.1 | Tomato | nucleus | 70.75 | 72.22 |
| CDY00134 | Canola | nucleus | 70.75 | 72.22 |
| Bra039057.1-P | Field mustard | nucleus | 70.75 | 72.22 |
| AT5G51940.1 | Thale cress | nucleus | 70.75 | 72.22 |
| CDY30291 | Canola | nucleus | 70.07 | 71.53 |
| CDY30836 | Canola | nucleus | 69.39 | 70.83 |
| AT2G04630.1 | Thale cress | nucleus | 69.39 | 70.83 |
| Bra025617.1-P | Field mustard | nucleus | 69.39 | 70.83 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.6.4 | Gene3D:3.90.940.10 | UniProt:A0A1B6QJK0 | InterPro:DNA-dir_RNA_polK_14-18kDa_CS |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | InterPro:IPR012293 | EnsemblPlants:KXG38092 | ProteinID:KXG38092 | ProteinID:KXG38092.1 | HAMAP:MF_00192 |
| PFAM:PF01192 | ScanProsite:PS01111 | PANTHER:PTHR10773 | PANTHER:PTHR10773:SF14 | InterPro:Pol_omega/K/RPB6 | InterPro:RNAP_RPB6_omega |
| InterPro:RPB6/omega_like_sf | InterPro:RpoK/Rpb6 | SMART:SM01409 | EnsemblPlantsGene:SORBI_3001G179000 | SUPFAM:SSF63562 | SignalP:SignalP-noTM |
| UniParc:UPI0001C80D5C | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:15156240..15159062
Molecular Weight (calculated)
17141.0 Da
IEP (calculated)
4.054
GRAVY (calculated)
-0.849
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVLLDLWSY CSFLLYSYED EPEPPEIEEG DEEELENNED APDEIIGGEG EEKEQEKTKR ERKTSKYMTK YERARILGTR ALQISMNAPV MVELEGETDP
101: LEIAMKELRA RKIPFTIRRY LPDGSYEDWG VDELIVEDSW KRQVGGD
101: LEIAMKELRA RKIPFTIRRY LPDGSYEDWG VDELIVEDSW KRQVGGD
001: MADEDYNDVD DLGYEDEPAE PEIEEGVEED VEMKENDDVN GEPIEAEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
Arabidopsis Description
NRPB6ANRPE6A [Source:UniProtKB/TrEMBL;Acc:A0A178UA32]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.