CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX91612
CDY02749
CDY08148
CDY24170
CDY25892
CDY27099
CDY36943
CDY44770
CDY49730
CDY58843

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04630.1	CDY24170	AT3G47620.1	21798944
AT2G04630.1	CDY36943	AT3G47620.1	21798944
AT2G04630.1	CDY08148	AT3G49580.1	21798944
AT2G04630.1	CDY44770	AT5G08330.1	21798944
AT2G04630.1	CDX91612	AT5G51910.1	21798944
AT2G04630.1	CDY27099	AT5G51910.1	21798944
AT2G04630.1	CDY02749	AT5G57660.1	21798944
AT2G04630.1	CDY25892	AT5G57660.1	21798944
AT2G04630.1	CDY49730	AT5G57660.1	21798944
AT2G04630.1	CDY58843	AT5G57660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025617.1-P	Field mustard	nucleus	100.0	100.0
CDY30291	Canola	nucleus	98.61	98.61
AT2G04630.1	Thale cress	nucleus	93.75	93.75
AT5G51940.1	Thale cress	nucleus	93.06	93.06
CDY00134	Canola	nucleus	90.28	90.28
CDY20025	Canola	nucleus	90.28	90.28
KRG91449	Soybean	nucleus	81.94	83.1
VIT_12s0028g01210.t01	Wine grape	nucleus	80.56	82.27
GSMUA_Achr4P27190_001	Banana	nucleus	78.47	79.58
VIT_16s0100g00530.t01	Wine grape	nucleus	78.47	79.58
Os03t0586600-01	Rice	nucleus	77.78	78.87
GSMUA_Achr3P18200_001	Banana	nucleus	77.78	78.32
Zm00001d033099_P001	Maize	nucleus	76.39	77.46
Zm00001d013780_P001	Maize	nucleus	76.39	77.46
Solyc09g010500.2.1	Tomato	nucleus	77.08	77.08
TraesCS2B01G194500.1	Wheat	nucleus	75.69	76.76
TraesCS2D01G175800.1	Wheat	nucleus	75.69	76.76
KRH35367	Soybean	nucleus	77.78	76.71
HORVU2Hr1G030940.1	Barley	nucleus	75.0	76.06
PGSC0003DMT400023048	Potato	nucleus	75.69	75.69
Os07t0463100-01	Rice	nucleus	74.31	75.35
EER96335	Sorghum	nucleus	74.31	74.83
KXG38092	Sorghum	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	70.83	69.39
Os08t0426000-00	Rice	nucleus	34.72	16.23

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	MapMan:15.1.6.4	Gene3D:3.90.940.10	GO:A0A078GZA3	UniProt:A0A078GZA3
EnsemblPlants:CDY30836	ProteinID:CDY30836	ProteinID:CDY30836.1	InterPro:DNA-dir_RNA_polK_14-18kDa_CS	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005665	GO:GO:0006139	GO:GO:0006351
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00046303001
InterPro:IPR012293	HAMAP:MF_00192	PFAM:PF01192	PIRSF:PIRSF000778	PIRSF:PIRSF500154	ScanProsite:PS01111
PANTHER:PTHR10773	PANTHER:PTHR10773:SF14	InterPro:Pol_omega/K/RPB6	InterPro:RNAP_RPB6_omega	InterPro:RPB6	InterPro:RPB6/omega_like_sf
InterPro:RpoK/Rpb6	SMART:SM01409	SUPFAM:SSF63562	UniParc:UPI0002544B58	SEG:seg	:

Description

BnaC04g26910DBnaC04g26910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZA3]

Coordinates

chrLK032262:+:12893..14578

Molecular Weight (calculated)

16641.2 Da

IEP (calculated)

3.919

GRAVY (calculated)

-0.973

Length

144 amino acids

Sequence
(BLAST)

001: MADDDYNEVD DLGYEDEPAE PEIEEGIDED ADMKDNDDIN GEPLETEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD

Best Arabidopsis Sequence Match ( AT5G51940.1 )
(BLAST)

001: MADEDYNDVD DLGYEDEPAE PEIEEGVEED VEMKENDDVN GEPIEAEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD

Arabidopsis Description

NRPB6ANRPE6A [Source:UniProtKB/TrEMBL;Acc:A0A178UA32]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.