Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G57660.1 | CDX82214 | AT3G21150.1 | 21798944 |
| AT5G57660.1 | CDY19582 | AT3G21150.1 | 21798944 |
| AT5G57660.1 | CDY32408 | AT3G21150.1 | 21798944 |
| AT5G57660.1 | CDY50075 | AT3G21150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58843 | Canola | nucleus, plastid | 97.3 | 73.68 |
| CDY25892 | Canola | nucleus | 82.63 | 64.26 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 87.26 | 63.66 |
| CDY49730 | Canola | nucleus | 45.56 | 54.13 |
| CDY69474 | Canola | nucleus, plastid | 18.15 | 48.96 |
| CDY19821 | Canola | nucleus | 51.35 | 45.24 |
| CDX88145 | Canola | nucleus | 50.19 | 44.22 |
| KRH18980 | Soybean | nucleus | 61.78 | 43.84 |
| KRH02915 | Soybean | nucleus | 62.16 | 43.05 |
| CDY36171 | Canola | nucleus | 47.49 | 42.41 |
| CDX87105 | Canola | nucleus, plastid | 51.74 | 42.27 |
| CDY45597 | Canola | nucleus | 47.1 | 42.21 |
| CDX80476 | Canola | nucleus, plastid | 51.35 | 40.43 |
| CDY71884 | Canola | nucleus | 38.61 | 33.9 |
| CDX85529 | Canola | nucleus | 40.54 | 33.12 |
| CDY71818 | Canola | nucleus | 37.84 | 33.11 |
| CDX69493 | Canola | nucleus | 42.86 | 32.94 |
| CDY26470 | Canola | nucleus | 42.08 | 32.73 |
| CDX90969 | Canola | nucleus | 40.15 | 32.4 |
| CDY26469 | Canola | nucleus | 44.79 | 31.69 |
| CDX69494 | Canola | nucleus | 44.79 | 31.52 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 42.08 | 29.54 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 42.08 | 29.54 |
| CDX74261 | Canola | nucleus | 25.48 | 28.95 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 41.31 | 28.92 |
| Os06t0275000-01 | Rice | mitochondrion | 43.24 | 28.35 |
| EER88227 | Sorghum | nucleus | 44.79 | 28.22 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 40.93 | 27.68 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 40.93 | 27.53 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 40.54 | 27.42 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 44.4 | 26.87 |
| CDX91989 | Canola | nucleus | 23.55 | 26.75 |
| OQU85473 | Sorghum | nucleus | 37.07 | 26.23 |
| CDY07979 | Canola | nucleus | 28.57 | 21.02 |
| CDY15696 | Canola | nucleus | 23.17 | 20.76 |
| CDY35952 | Canola | nucleus | 29.34 | 20.6 |
| CDY22125 | Canola | nucleus | 28.96 | 20.49 |
| CDY28029 | Canola | nucleus | 29.34 | 20.43 |
| CDY48743 | Canola | nucleus | 27.41 | 20.29 |
| CDY05691 | Canola | nucleus | 27.03 | 20.17 |
| CDY53026 | Canola | nucleus | 25.1 | 19.46 |
| CDX80141 | Canola | nucleus | 24.32 | 18.98 |
| CDX74034 | Canola | nucleus | 28.57 | 18.97 |
| CDX86318 | Canola | nucleus | 25.48 | 18.44 |
| CDX85321 | Canola | nucleus | 25.48 | 18.38 |
| CDY68819 | Canola | nucleus | 25.48 | 17.05 |
| CDY30385 | Canola | nucleus | 25.48 | 17.05 |
| CDY11755 | Canola | nucleus | 25.1 | 16.54 |
| CDY64255 | Canola | nucleus | 23.55 | 16.44 |
| CDY66639 | Canola | nucleus | 25.1 | 16.13 |
| CDY55657 | Canola | nucleus | 23.94 | 16.06 |
| CDX90119 | Canola | nucleus | 23.94 | 14.8 |
| CDY04213 | Canola | nucleus | 17.37 | 13.39 |
| CDY48428 | Canola | nucleus | 12.36 | 11.85 |
| CDY07393 | Canola | nucleus | 18.15 | 8.77 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078EPZ5 | InterPro:CCT_domain | EnsemblPlants:CDY02749 | ProteinID:CDY02749 | ProteinID:CDY02749.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00114910001 | InterPro:IPR000315 | InterPro:IPR010402 | PFAM:PF00643 | PFAM:PF06203 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF14 | SMART:SM00336 | UniParc:UPI0004EDE3D3 |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
BnaC02g11400D
Coordinates
chrLK031937:+:126381..127792
Molecular Weight (calculated)
28300.0 Da
IEP (calculated)
7.316
GRAVY (calculated)
-0.248
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFGLESIKP LSGGWGAAAR SCDACKSASA AVFCRVDSAF LCITCDASIH SFTRHERVYV CEVCEQAPAA VTCKADAASL CVTCDSDIHS ANPLASRHER
101: VPVESFFDAA VAKISPSTFG VLGDSTTVDL TASSEFMFSD FDRLIDFDHS VSTSSLEYGV VPDGTTSVPF NRSTITTSTA TTGERPSSMD REARVLRYRE
201: KRKNRKFEKT IRYASRKAYA ESRPRIKGRF AKRTETENDD VFFSQVYASA GQYGVVPTF
101: VPVESFFDAA VAKISPSTFG VLGDSTTVDL TASSEFMFSD FDRLIDFDHS VSTSSLEYGV VPDGTTSVPF NRSTITTSTA TTGERPSSMD REARVLRYRE
201: KRKNRKFEKT IRYASRKAYA ESRPRIKGRF AKRTETENDD VFFSQVYASA GQYGVVPTF
001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
Arabidopsis Description
COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.