CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80136
CDX82214
CDX83320
CDX84419
CDY05857
CDY08084
CDY19582
CDY32408
CDY50075
CDY53021
CDY66668

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28050.1	CDX80136	AT2G47810.1	17138697
AT1G28050.1	CDX83320	AT2G47810.1	17138697
AT1G28050.1	CDY53021	AT2G47810.1	17138697
AT1G28050.1	CDX82214	AT3G21150.1	21798944
AT1G28050.1	CDY19582	AT3G21150.1	21798944
AT1G28050.1	CDY32408	AT3G21150.1	21798944
AT1G28050.1	CDY50075	AT3G21150.1	21798944
AT1G28050.1	CDX84419	AT5G63470.1	17138697
AT1G28050.1	CDY05857	AT5G63470.1	17138697
AT1G28050.1	CDY08084	AT5G63470.1	17138697
AT1G28050.1	CDY66668	AT5G63470.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90119	Canola	nucleus	93.64	87.83
CDY15696	Canola	nucleus	56.74	77.16
CDY30385	Canola	nucleus	74.3	75.45
CDY68819	Canola	nucleus	74.05	75.19
CDY66639	Canola	nucleus	75.06	73.2
CDY48428	Canola	nucleus	48.35	70.37
AT1G28050.1	Thale cress	nucleus	76.84	69.75
VIT_01s0146g00360.t01	Wine grape	nucleus	54.45	45.63
Solyc05g024010.2.1	Tomato	nucleus	50.13	43.58
PGSC0003DMT400065377	Potato	nucleus	49.87	43.27
VIT_14s0068g01380.t01	Wine grape	nucleus	43.0	37.64
KRH06865	Soybean	nucleus	32.57	33.6
KRG94656	Soybean	nucleus	32.32	32.99
GSMUA_Achr10P...	Banana	nucleus	38.42	32.97
CDY53026	Canola	nucleus	27.74	32.63
CDX80141	Canola	nucleus	27.48	32.53
GSMUA_Achr6P06130_001	Banana	nucleus	35.37	31.24
EES14176	Sorghum	nucleus	38.68	31.02
Os09t0509700-01	Rice	nucleus	33.33	30.39
Zm00001d031662_P001	Maize	nucleus	36.64	29.45
GSMUA_Achr11P...	Banana	nucleus	38.68	29.34
TraesCS7D01G264300.1	Wheat	nucleus	36.39	29.24
TraesCS7B01G161500.1	Wheat	nucleus	36.13	29.1
TraesCS7A01G263500.1	Wheat	nucleus	36.13	28.98
CDY45597	Canola	nucleus	20.61	28.03
CDY36171	Canola	nucleus	20.61	27.93
CDY48743	Canola	nucleus	24.43	27.43
CDY19821	Canola	nucleus	20.36	27.21
CDY05691	Canola	nucleus	23.92	27.09
CDX88145	Canola	nucleus	20.1	26.87
CDY35952	Canola	nucleus	25.19	26.83
CDY07979	Canola	nucleus	23.92	26.7
CDY22125	Canola	nucleus	24.68	26.5
CDX86318	Canola	nucleus	23.92	26.26
CDX85321	Canola	nucleus	23.92	26.18
CDY28029	Canola	nucleus	24.68	26.08
CDY69474	Canola	nucleus, plastid	6.36	26.04
CDY02749	Canola	nucleus, plastid	16.54	25.1
CDX87105	Canola	nucleus, plastid	20.1	24.92
CDX80476	Canola	nucleus, plastid	20.36	24.32
CDX74034	Canola	nucleus	23.41	23.59
CDY64255	Canola	nucleus	21.88	23.18
CDY71884	Canola	nucleus	17.3	23.05
CDY71818	Canola	nucleus	17.05	22.64
CDX90969	Canola	nucleus	18.32	22.43
CDX85529	Canola	nucleus	18.07	22.4
CDY04213	Canola	nucleus	19.08	22.32
CDY55657	Canola	nucleus	21.63	22.02
HORVU0Hr1G021050.5	Barley	cytosol	23.66	21.99
CDY25892	Canola	nucleus	17.81	21.02
CDY26470	Canola	nucleus	17.56	20.72
CDX69493	Canola	nucleus	17.56	20.47
CDY58843	Canola	nucleus, plastid	17.81	20.47
CDX74261	Canola	nucleus	11.45	19.74
CDX69494	Canola	nucleus	18.07	19.29
CDY26469	Canola	nucleus	17.81	19.13
CDX91989	Canola	nucleus	10.18	17.54
CDY49730	Canola	nucleus	9.41	16.97
CDY07393	Canola	nucleus	20.36	14.93

Protein Annotations

MapMan:15.5.1.2	GO:A0A078FBI5	UniProt:A0A078FBI5	InterPro:CCT_domain	EnsemblPlants:CDY11755	ProteinID:CDY11755
ProteinID:CDY11755.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00049974001
InterPro:IPR000315	InterPro:IPR010402	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717
PANTHER:PTHR31717:SF20	SMART:SM00336	UniParc:UPI0004EDEF66	InterPro:Znf_B-box	SEG:seg	:

Description

BnaC03g58230DBnaC03g58230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBI5]

Coordinates

chrLK032014:+:117125..119218

Molecular Weight (calculated)

43397.7 Da

IEP (calculated)

6.930

GRAVY (calculated)

-0.645

Length

393 amino acids

Sequence
(BLAST)

001: MSSSERVPCD FCNERAAVLF CRADAAKLCL PCDRHVHTAN LLSKKHVRSQ ICDNCGSEPV SVRCFTDSLV LCQECDWDVH GSCSVSDAHV RSVVEGFTGC
101: PSALELGALW GIDLEGRKEE EKQVPVRMES FGMELDSWIS GSNVLQELVV PVPKKGGSSC GRYKQVLGKQ LEELLRSGGG GDDGGDEEEI SGGGGEVNQQ
201: PPTTSFTSLL WNASDGQKQS TQIWDFNLGQ SREPEVNSRM EAAAYVTKDA ASFKINSFVE VKKNDTCSTK AKGVKEIFQD DYNQSTSGQV PVTYESNNLP
301: ISFGSEKGSN SSSELNFTEK FAGTSCKSTR LVATKADLER LAQNRDNAMQ RYKEKRKNRR YDKTIRYESR KARADTRLRV KGRFVKATEA PYP

Best Arabidopsis Sequence Match ( AT2G33500.2 )
(BLAST)

001: MGTSTTESVV ACEFCGERTA VLFCRADTAK LCLPCDQHVH SANLLSRKHV RSQICDNCSK EPVSVRCFTD NLVLCQECDW DVHGSCSSSA THERSAVEGF
101: SGCPSVLELA AVWGIDLKGK KKEDDEDELT KNFGMGLDSW GSGSNIVQEL IVPYDVSCKK QSFSFGRSKQ VVFEQLELLK RGFVEGEGEI MVPEGINGGG
201: SISQPSPTTS FTSLLMSQSL CGNGMQWNAT NHSTGQNTQI WDFNLGQSRN PDEPSPVETK GSTFTFNNVT HLKNDTRTTN MNAFKESYQE DSVHSTSTKG
301: QETSKSNNIP AAIHSHKSSN DSCGLHCTEH IAITSNRATR LVAVTNADLE QMAQNRDNAM QRYKEKKKTR RYDKTIRYET RKARAETRLR VKGRFVKATD
401: P

Arabidopsis Description

COL14Zinc finger protein CONSTANS-LIKE 14 [Source:UniProtKB/Swiss-Prot;Acc:O22800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.