Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48250.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020709.1-P | Field mustard | nucleus | 99.14 | 98.86 |
| CDY05691 | Canola | nucleus | 94.57 | 95.39 |
| CDX85321 | Canola | nucleus | 84.29 | 82.17 |
| CDX86318 | Canola | nucleus | 83.43 | 81.56 |
| AT5G48250.1 | Thale cress | nucleus | 83.71 | 78.55 |
| CDY35952 | Canola | nucleus | 72.86 | 69.11 |
| CDY07979 | Canola | nucleus | 69.43 | 69.03 |
| CDY22125 | Canola | nucleus | 71.14 | 68.03 |
| CDY28029 | Canola | nucleus | 72.29 | 68.01 |
| CDX74034 | Canola | nucleus | 69.71 | 62.56 |
| KRH17709 | Soybean | nucleus | 62.0 | 53.06 |
| KRH72628 | Soybean | nucleus | 60.57 | 52.35 |
| KRG89998 | Soybean | nucleus | 60.86 | 52.08 |
| KRH16989 | Soybean | nucleus | 61.14 | 52.07 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 60.86 | 51.33 |
| PGSC0003DMT400074143 | Potato | nucleus | 56.86 | 48.77 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 56.0 | 47.34 |
| PGSC0003DMT400044878 | Potato | nucleus | 54.86 | 46.72 |
| Solyc05g020020.2.1 | Tomato | nucleus | 54.29 | 46.34 |
| PGSC0003DMT400013624 | Potato | nucleus | 54.57 | 46.25 |
| Os02t0724000-01 | Rice | nucleus | 53.71 | 46.19 |
| Solyc07g045180.2.1 | Tomato | nucleus | 55.14 | 46.17 |
| Os06t0298200-01 | Rice | nucleus | 53.43 | 45.83 |
| KXG19836 | Sorghum | nucleus | 53.71 | 45.74 |
| TraesCS6A01G286400.3 | Wheat | nucleus | 50.86 | 45.64 |
| HORVU6Hr1G071950.2 | Barley | nucleus | 49.14 | 45.03 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 50.86 | 44.95 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 50.86 | 44.95 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 50.29 | 44.9 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 49.43 | 44.25 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 49.14 | 44.1 |
| GSMUA_Achr3P04260_001 | Banana | nucleus | 52.86 | 44.05 |
| EES07342 | Sorghum | nucleus | 50.86 | 43.84 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 51.14 | 43.45 |
| Solyc12g006240.1.1 | Tomato | nucleus | 33.14 | 43.12 |
| Zm00001d051684_P007 | Maize | nucleus | 49.43 | 42.61 |
| GSMUA_Achr10P... | Banana | nucleus | 48.29 | 42.14 |
| Zm00001d045804_P003 | Maize | nucleus | 52.0 | 41.74 |
| GSMUA_Achr5P04270_001 | Banana | nucleus | 50.29 | 41.71 |
| GSMUA_Achr9P12860_001 | Banana | nucleus | 49.43 | 41.49 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 38.86 | 40.36 |
| Zm00001d017885_P001 | Maize | nucleus | 44.57 | 33.84 |
| CDY69474 | Canola | nucleus, plastid | 8.86 | 32.29 |
| CDY64255 | Canola | nucleus | 32.29 | 30.46 |
| CDY55657 | Canola | nucleus | 31.71 | 28.76 |
| CDY15696 | Canola | nucleus | 23.71 | 28.72 |
| CDY02749 | Canola | nucleus, plastid | 20.29 | 27.41 |
| CDY04213 | Canola | nucleus | 25.43 | 26.49 |
| CDY19821 | Canola | nucleus | 21.14 | 25.17 |
| CDX88145 | Canola | nucleus | 20.86 | 24.83 |
| CDY68819 | Canola | nucleus | 27.14 | 24.55 |
| CDY30385 | Canola | nucleus | 27.14 | 24.55 |
| CDY11755 | Canola | nucleus | 27.43 | 24.43 |
| CDX85529 | Canola | nucleus | 21.71 | 23.97 |
| CDY36171 | Canola | nucleus | 19.71 | 23.79 |
| CDX90969 | Canola | nucleus | 21.71 | 23.68 |
| CDY45597 | Canola | nucleus | 19.43 | 23.53 |
| CDY25892 | Canola | nucleus | 22.0 | 23.12 |
| CDY26470 | Canola | nucleus | 22.0 | 23.12 |
| CDY53026 | Canola | nucleus | 22.0 | 23.05 |
| CDX90119 | Canola | nucleus | 27.43 | 22.91 |
| CDX80141 | Canola | nucleus | 21.71 | 22.89 |
| CDY58843 | Canola | nucleus, plastid | 22.29 | 22.81 |
| CDX80476 | Canola | nucleus, plastid | 21.43 | 22.8 |
| CDX87105 | Canola | nucleus, plastid | 20.57 | 22.71 |
| CDY66639 | Canola | nucleus | 26.0 | 22.58 |
| CDX69493 | Canola | nucleus | 21.71 | 22.55 |
| CDY71884 | Canola | nucleus | 18.0 | 21.36 |
| CDY71818 | Canola | nucleus | 18.0 | 21.28 |
| CDY49730 | Canola | nucleus | 13.14 | 21.1 |
| CDY26469 | Canola | nucleus | 21.71 | 20.77 |
| CDX69494 | Canola | nucleus | 21.71 | 20.65 |
| CDY07393 | Canola | nucleus | 26.29 | 17.16 |
| CDX91989 | Canola | nucleus | 11.14 | 17.11 |
| CDX74261 | Canola | nucleus | 10.29 | 15.79 |
| CDY48428 | Canola | nucleus | 12.0 | 15.56 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078IHY6 | UniProt:A0A078IHY6 | InterPro:CCT_domain | EnsemblPlants:CDY48743 | ProteinID:CDY48743 |
| ProteinID:CDY48743.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00091645001 | InterPro:IPR000315 | InterPro:IPR010402 |
| PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF39 |
| SMART:SM00336 | UniParc:UPI0004EE8230 | InterPro:Znf_B-box | SEG:seg | : | : |
Description
BnaA02g30040DBnaA02g30040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHY6]
Coordinates
chrLK032789:-:48443..50848
Molecular Weight (calculated)
38773.9 Da
IEP (calculated)
5.669
GRAVY (calculated)
-0.664
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYMCDFCNE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC SDERVSLCQN CDWSGHNNDA TSQHKRQSIN CYSGCPSSEE
101: LASIWSFCLD LNFSSAGQSA CEQEMGLMTI DEGTGEDKPG VQNVNLDQPG TSSALAKDIG VSEDDFCGNL MMDEVDLAFE KYDELFGTAY NSSKDLFEHG
201: GIGSLFEKHE GSKAMQQPAG SNAASEDSFM TCRTEPIICF SSQPAHSNIS FSVVMGDSNA GDFQDCGASS MQKLSREITS QEETNASSHA TTRNNAVLRY
301: KEKKKARKFD KRVRYVSRKE RADVRRRVKG RFVKSGEAYD YDPMSPARSY
101: LASIWSFCLD LNFSSAGQSA CEQEMGLMTI DEGTGEDKPG VQNVNLDQPG TSSALAKDIG VSEDDFCGNL MMDEVDLAFE KYDELFGTAY NSSKDLFEHG
201: GIGSLFEKHE GSKAMQQPAG SNAASEDSFM TCRTEPIICF SSQPAHSNIS FSVVMGDSNA GDFQDCGASS MQKLSREITS QEETNASSHA TTRNNAVLRY
301: KEKKKARKFD KRVRYVSRKE RADVRRRVKG RFVKSGEAYD YDPMSPARSY
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNAQPASVRC SDERVSLCQN CDWSGHDGKN STTTSHHKRQ TINCYSGCPS
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY
Arabidopsis Description
COL10Zinc finger protein CONSTANS-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUA9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.