Factsheet for VIT_00s0194g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01920.t01
VIT_02s0012g01930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	VIT_02s0012g01920.t01	AT1G32230.1	19548978
AT5G48250.1	VIT_02s0012g01930.t01	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17709	Soybean	nucleus	65.22	66.01
KRG89998	Soybean	nucleus	64.49	65.28
VIT_12s0057g01350.t01	Wine grape	nucleus	65.22	65.06
KRH72628	Soybean	nucleus	62.8	64.2
KRH16989	Soybean	nucleus	63.53	63.99
Bra001264.1-P	Field mustard	nucleus	51.69	60.97
CDY35952	Canola	nucleus	52.9	59.35
KXG19836	Sorghum	nucleus	58.45	58.88
CDY28029	Canola	nucleus	52.9	58.87
GSMUA_Achr3P04260_001	Banana	nucleus	59.66	58.81
AT3G07650.1	Thale cress	nucleus	52.66	58.6
CDY07979	Canola	nucleus	49.76	58.52
Solyc05g020020.2.1	Tomato	nucleus	57.73	58.29
Os06t0298200-01	Rice	nucleus	57.25	58.09
PGSC0003DMT400013624	Potato	nucleus	57.49	57.63
TraesCS7D01G220300.1	Wheat	nucleus	55.07	57.58
GSMUA_Achr9P12860_001	Banana	nucleus	57.97	57.55
Bra040020.1-P	Field mustard	nucleus	50.72	57.38
TraesCS7A01G218600.1	Wheat	nucleus	54.83	57.32
GSMUA_Achr7P20150_001	Banana	nucleus	57.0	57.28
Os02t0724000-01	Rice	nucleus	56.28	57.25
PGSC0003DMT400074143	Potato	nucleus	56.28	57.11
CDY22125	Canola	nucleus	50.48	57.1
AT5G48250.1	Thale cress	nucleus	51.21	56.84
CDX85321	Canola	nucleus	49.28	56.82
Bra029666.1-P	Field mustard	nucleus	52.9	56.74
CDY05691	Canola	nucleus	47.1	56.2
HORVU6Hr1G071950.2	Barley	nucleus	51.69	56.02
CDY48743	Canola	nucleus	47.34	56.0
PGSC0003DMT400044878	Potato	nucleus	55.56	55.96
CDX86318	Canola	nucleus	48.31	55.87
GSMUA_Achr10P...	Banana	nucleus	53.86	55.61
EES07342	Sorghum	nucleus	54.35	55.42
TraesCS6B01G315400.1	Wheat	nucleus	52.17	55.38
Bra020709.1-P	Field mustard	nucleus	46.86	55.27
Solyc07g045180.2.1	Tomato	nucleus	55.8	55.26
GSMUA_Achr5P04270_001	Banana	nucleus	56.28	55.21
Bra037499.1-P	Field mustard	nucleus	45.89	55.07
CDX74034	Canola	nucleus	51.69	54.87
GSMUA_Achr5P22460_001	Banana	nucleus	51.69	54.73
TraesCS6A01G286400.3	Wheat	nucleus	51.21	54.36
TraesCS6D01G267100.1	Wheat	nucleus	51.21	54.08
Zm00001d051684_P007	Maize	nucleus	52.9	53.94
Zm00001d045804_P003	Maize	nucleus	56.52	53.67
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	43.48	53.41
Solyc12g006240.1.1	Tomato	nucleus	33.09	50.93
Zm00001d017885_P001	Maize	nucleus	48.07	43.17
VIT_12s0059g02500.t01	Wine grape	nucleus	42.27	40.32
VIT_19s0014g05120.t01	Wine grape	nucleus	24.64	27.2
VIT_01s0011g04240.t01	Wine grape	nucleus	20.53	23.81
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	19.81	23.63
VIT_01s0146g00360.t01	Wine grape	nucleus	26.33	23.24
VIT_07s0104g01360.t01	Wine grape	nucleus	21.98	23.1
VIT_14s0068g01380.t01	Wine grape	nucleus	24.15	22.27
VIT_11s0052g01800.t01	Wine grape	nucleus, plastid	19.32	22.16
VIT_14s0083g00640.t01	Wine grape	nucleus	20.77	21.99

Protein Annotations

EntrezGene:100255380	wikigene:100255380	MapMan:15.5.1.2	ProteinID:CCB50047	ProteinID:CCB50047.1	InterPro:CCT_domain
UniProt:F6HCV2	EMBL:FN595527	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402
EntrezGene:LOC100255380	wikigene:LOC100255380	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717
PANTHER:PTHR31717:SF39	SMART:SM00336	UniParc:UPI00015CE192	ArrayExpress:VIT_00s0194g00070	EnsemblPlantsGene:VIT_00s0194g00070	EnsemblPlants:VIT_00s0194g00070.t01
unigene:Vvi.13714	RefSeq:XP_002265377	RefSeq:XP_002265377.2	RefSeq:XP_010646236.1	RefSeq:XP_010646237.1	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:10574519..10586473

Molecular Weight (calculated)

45043.6 Da

IEP (calculated)

5.144

GRAVY (calculated)

-0.401

Length

414 amino acids

Sequence
(BLAST)

001: MGQLCDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPATVRC VEEKISLCQN CNWIGHGSTT SASDHKRQTI NCYSGCPSAA
101: ELSRIWSFVL EFLSVDDSNC EQGMVLMSLT ENSVGSCSLP PVNNNINDST VAGRTNAQEN VDKSDLWMAS SPVPALNPIS SSVDQPTDLV NSPTTKLCCS
201: GICDDDDLLY EDFSMADVDL SIENYEELFG VSQNHSEQLL ENGGIDSLFG IGNLPGTDAS ARGAYVAEGS SVVHIKAMQP ACSNPISADS IISSKTDPNL
301: CFPPRQAHSS LSLSFSGLTG ESSTGDYQDC GVSSMLLMGE PPWCSPCPEN SLPSANRDSA VLRYKEKKKA RKFEKKIRYA SRKARADVRK RVKGRFVKAG
401: DAYDYDPLNQ TRSF

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.