Factsheet for GSMUA_Achr5P22460_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P18060_001
GSMUA_Achr4P19000_001
GSMUA_Achr5P14120_001
GSMUA_Achr8P14660_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	GSMUA_Achr11P...	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr2P18060_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr4P19000_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr5P14120_001	AT1G32230.1	19548978
AT5G48250.1	GSMUA_Achr8P14660_001	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P20150_001	Banana	nucleus	68.8	65.29
GSMUA_Achr10P...	Banana	nucleus	62.4	60.85
GSMUA_Achr3P04260_001	Banana	nucleus	61.38	57.14
GSMUA_Achr9P12860_001	Banana	nucleus	60.61	56.83
GSMUA_Achr5P04270_001	Banana	nucleus	58.82	54.5
KRG89998	Soybean	nucleus	54.48	52.08
KRH72628	Soybean	nucleus	53.71	51.85
VIT_00s0194g00070.t01	Wine grape	nucleus	54.73	51.69
Os02t0724000-01	Rice	nucleus	53.71	51.6
KRH17709	Soybean	nucleus	53.45	51.1
KRH16989	Soybean	nucleus	53.71	51.09
EES07342	Sorghum	nucleus	52.69	50.74
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	11.51	50.56
VIT_12s0057g01350.t01	Wine grape	nucleus	53.45	50.36
KXG19836	Sorghum	nucleus	52.69	50.12
Os06t0298200-01	Rice	nucleus	51.92	49.75
Zm00001d051684_P007	Maize	nucleus	51.66	49.75
TraesCS6A01G286400.3	Wheat	nucleus	49.36	49.49
CDY48743	Canola	nucleus	44.25	49.43
Bra020709.1-P	Field mustard	nucleus	44.25	49.29
Bra001264.1-P	Field mustard	nucleus	44.25	49.29
HORVU6Hr1G071950.2	Barley	nucleus	48.08	49.21
AT3G07650.1	Thale cress	nucleus	46.55	48.92
Bra040020.1-P	Field mustard	nucleus	45.78	48.91
TraesCS7A01G218600.1	Wheat	nucleus	49.36	48.74
TraesCS7D01G220300.1	Wheat	nucleus	49.36	48.74
TraesCS6D01G267100.1	Wheat	nucleus	48.85	48.72
CDY22125	Canola	nucleus	45.52	48.63
CDY07979	Canola	nucleus	43.73	48.58
CDY35952	Canola	nucleus	45.78	48.51
TraesCS6B01G315400.1	Wheat	nucleus	48.34	48.46
CDY28029	Canola	nucleus	46.04	48.39
CDY05691	Canola	nucleus	42.71	48.13
CDX86318	Canola	nucleus	43.99	48.04
CDX85321	Canola	nucleus	43.99	47.91
AT5G48250.1	Thale cress	nucleus	45.52	47.72
PGSC0003DMT400013624	Potato	nucleus	50.13	47.46
Bra037499.1-P	Field mustard	nucleus	41.69	47.25
Bra029666.1-P	Field mustard	nucleus	46.04	46.63
Solyc05g020020.2.1	Tomato	nucleus	48.85	46.59
Zm00001d045804_P003	Maize	nucleus	51.92	46.56
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	39.64	45.99
PGSC0003DMT400074143	Potato	nucleus	47.83	45.83
CDX74034	Canola	nucleus	45.27	45.38
PGSC0003DMT400044878	Potato	nucleus	46.29	44.04
Solyc07g045180.2.1	Tomato	nucleus	46.55	43.54
Zm00001d017885_P001	Maize	nucleus	48.34	41.0
Solyc12g006240.1.1	Tomato	nucleus	26.85	39.03
GSMUA_Achr4P18680_001	Banana	nucleus	6.65	29.55
GSMUA_Achr7P16370_001	Banana	nucleus	19.69	26.37
GSMUA_Achr10P...	Banana	nucleus	20.72	25.39
GSMUA_Achr9P19630_001	Banana	nucleus	21.48	25.23
GSMUA_Achr2P04960_001	Banana	nucleus	16.37	23.79
GSMUA_Achr1P23420_001	Banana	nucleus	19.44	22.69
GSMUA_AchrUn_...	Banana	nucleus	18.41	22.57
GSMUA_Achr11P...	Banana	nucleus	19.69	22.13
GSMUA_Achr9P22690_001	Banana	nucleus, plastid	15.6	20.96
GSMUA_Achr3P28130_001	Banana	nucleus	14.58	20.36
GSMUA_Achr10P...	Banana	nucleus	23.79	20.31
GSMUA_Achr6P06130_001	Banana	nucleus	22.76	20.0
GSMUA_Achr3P08880_001	Banana	nucleus	19.69	18.87
GSMUA_Achr11P...	Banana	nucleus	23.79	17.95

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr5G22460_001	EnsemblPlants:GSMUA_Achr5P22460_001
EnsemblPlants:GSMUA_Achr5T22460_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0T0S1	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF39	SMART:SM00336	UniParc:UPI000294993A	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 9 [Source:GMGC_GENE;Acc:GSMUA_Achr5G22460_001]

Coordinates

chr5:-:24525899..24531015

Molecular Weight (calculated)

43473.8 Da

IEP (calculated)

5.309

GRAVY (calculated)

-0.501

Length

391 amino acids

Sequence
(BLAST)

001: MDHLCDFCTE QRSVVYCQSD AASLCLSCDR NVHSANALSL RHLRTLLCDQ CIVQPAVVRC IEENKSLCGN CDRKVHGGLA VASEHNRHLI NCYSGCPSAA
101: EFSRIWSFLE FLHMTDSDYE QGFMITNEDS MTIDKCNLWK GSSSASEIPM CYSADQPPNP VNSTTPKSYC PETNDTGFSK DDFDEGFTIG DVDMIFENYE
201: ELFGAANKQT KDLFDDAGID SFYDRKKNSP ACSLCHGELA AEASSAGQVK QMQIPCSDAV SADSVMSNPE EDPDCSPAFP ECKVQSSLSF SFSGVTGESN
301: AGDYQNCRKS DMLLMGKPPW YFAGSGSFSL PTSSRECALM RYKEKKKSRK FEKRVRYALR KARADIRRRV KGRFVKAGDA YDYDPLSHIS C

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.