Factsheet for Bra020709.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra023252.1-P
Bra035511.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	Bra023252.1-P	AT1G32230.1	19548978
AT5G48250.1	Bra035511.1-P	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48743	Canola	nucleus	98.86	99.14
CDY05691	Canola	nucleus	94.02	95.1
Bra037499.1-P	Field mustard	nucleus	79.77	81.16
AT5G48250.1	Thale cress	nucleus	83.19	78.28
Bra001264.1-P	Field mustard	nucleus	68.66	68.66
Bra040020.1-P	Field mustard	nucleus	71.23	68.31
Bra029666.1-P	Field mustard	nucleus	72.36	65.8
KRH17709	Soybean	nucleus	61.25	52.57
KRH72628	Soybean	nucleus	59.83	51.85
KRG89998	Soybean	nucleus	60.11	51.59
KRH16989	Soybean	nucleus	60.4	51.58
VIT_12s0057g01350.t01	Wine grape	nucleus	60.11	50.84
PGSC0003DMT400074143	Potato	nucleus	56.13	48.28
VIT_00s0194g00070.t01	Wine grape	nucleus	55.27	46.86
PGSC0003DMT400044878	Potato	nucleus	54.42	46.47
Os02t0724000-01	Rice	nucleus	53.56	46.19
Solyc07g045180.2.1	Tomato	nucleus	54.7	45.93
Solyc05g020020.2.1	Tomato	nucleus	53.56	45.85
PGSC0003DMT400013624	Potato	nucleus	53.85	45.76
Os06t0298200-01	Rice	nucleus	52.99	45.59
KXG19836	Sorghum	nucleus	53.28	45.5
TraesCS6A01G286400.3	Wheat	nucleus	50.43	45.38
HORVU6Hr1G071950.2	Barley	nucleus	48.72	44.76
TraesCS6D01G267100.1	Wheat	nucleus	49.86	44.64
TraesCS7D01G220300.1	Wheat	nucleus	50.14	44.44
TraesCS7A01G218600.1	Wheat	nucleus	50.14	44.44
GSMUA_Achr5P22460_001	Banana	nucleus	49.29	44.25
TraesCS6B01G315400.1	Wheat	nucleus	48.72	43.85
EES07342	Sorghum	nucleus	50.71	43.84
GSMUA_Achr3P04260_001	Banana	nucleus	52.42	43.81
GSMUA_Achr7P20150_001	Banana	nucleus	50.71	43.2
Solyc12g006240.1.1	Tomato	nucleus	32.48	42.38
Zm00001d051684_P007	Maize	nucleus	49.0	42.36
GSMUA_Achr10P...	Banana	nucleus	48.15	42.14
GSMUA_Achr5P04270_001	Banana	nucleus	50.14	41.71
Zm00001d045804_P003	Maize	nucleus	51.57	41.51
GSMUA_Achr9P12860_001	Banana	nucleus	49.29	41.49
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	38.18	39.76
Zm00001d017885_P001	Maize	nucleus	44.16	33.62
Bra023858.1-P	Field mustard	nucleus	31.34	28.5
Bra030070.1-P	Field mustard	nucleus	23.65	26.95
Bra023541.1-P	Field mustard	nucleus	21.65	24.13
Bra032061.1-P	Field mustard	nucleus	19.37	23.53
Bra041077.1-P	Field mustard	nucleus	27.07	23.28
Bra020425.1-P	Field mustard	nucleus, plastid	22.51	23.1
Bra004423.1-P	Field mustard	nucleus	21.65	22.75
Bra010908.1-P	Field mustard	nucleus	27.07	22.73
Bra008668.1-P	Field mustard	nucleus	21.65	22.55
Bra002709.1-P	Field mustard	nucleus	13.39	21.56
Bra036528.1-P	Field mustard	nucleus	21.08	21.45
Bra009805.1-P	Field mustard	nucleus	21.08	21.08
Bra008669.1-P	Field mustard	nucleus	21.65	20.77
Bra021464.1-P	Field mustard	nucleus	18.52	20.25
Bra001043.1-P	Field mustard	nucleus	9.97	15.35

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra020709	EnsemblPlants:Bra020709.1	EnsemblPlants:Bra020709.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4DW15	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF39	SMART:SM00336	UniParc:UPI0002546154
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

AT5G48250 (E=2e-074) | zinc finger (B-box type) family protein

Coordinates

chrA02:-:23606792..23608295

Molecular Weight (calculated)

38963.2 Da

IEP (calculated)

5.465

GRAVY (calculated)

-0.664

Length

351 amino acids

Sequence
(BLAST)

001: MGYMCDFCNE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC SDERVSLCQN CDWSNHNNDA TSQHKRQSIN CYSGCPSSEE
101: LASIWSFCMD LDFSSAGQSA CEQEMGLMTI DEGTGEDKPG VQNVNLDQPG TSSALAKDIG VSEDDFCGNL MMDEVDLAFE KYDELFGTAY NSSKDLFEHG
201: GIGSLFEKHE GSKAMQQPAG SNAASEDSFM TCRTEPIICF SSQPAHSNIS FSVVMGDSNA GDFQDCGASS MQKLSREIIT SQEETNASSH ATTRNNAVLR
301: YKEKKKARKF DKRVRYVSRK ERADVRRRVK GRFVKSGEAY DYDPMSPARS Y

Best Arabidopsis Sequence Match ( AT5G48250.1 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNAQPASVRC SDERVSLCQN CDWSGHDGKN STTTSHHKRQ TINCYSGCPS
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY

Arabidopsis Description

COL10Zinc finger protein CONSTANS-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.