Factsheet for Bra010908.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000462.1-P
Bra001815.1-P
Bra004428.1-P
Bra018046.1-P
Bra031255.1-P
Bra038636.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28050.1	Bra000462.1-P	AT2G47810.1	17138697
AT1G28050.1	Bra004428.1-P	AT2G47810.1	17138697
AT1G28050.1	Bra001815.1-P	AT3G21150.1	21798944
AT1G28050.1	Bra031255.1-P	AT3G21150.1	21798944
AT1G28050.1	Bra018046.1-P	AT5G63470.1	17138697
AT1G28050.1	Bra038636.1-P	AT5G63470.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90119	Canola	nucleus	98.56	98.33
Bra030070.1-P	Field mustard	nucleus	57.89	78.57
Bra041077.1-P	Field mustard	nucleus	71.77	73.53
AT1G28050.1	Thale cress	nucleus	75.36	72.75
VIT_01s0146g00360.t01	Wine grape	nucleus	51.67	46.06
Solyc05g024010.2.1	Tomato	nucleus	47.85	44.25
PGSC0003DMT400065377	Potato	nucleus	47.37	43.71
VIT_14s0068g01380.t01	Wine grape	nucleus	41.87	38.98
KRH06865	Soybean	nucleus	31.34	34.38
KRG94656	Soybean	nucleus	31.34	34.03
GSMUA_Achr10P...	Banana	nucleus	36.36	33.19
Bra004423.1-P	Field mustard	nucleus	25.84	32.34
GSMUA_Achr6P06130_001	Banana	nucleus	33.25	31.24
EES14176	Sorghum	nucleus	35.89	30.61
Os09t0509700-01	Rice	nucleus	31.34	30.39
Zm00001d031662_P001	Maize	nucleus	34.21	29.24
GSMUA_Achr11P...	Banana	nucleus	36.12	29.15
TraesCS7D01G264300.1	Wheat	nucleus	33.25	28.43
TraesCS7B01G161500.1	Wheat	nucleus	33.01	28.28
TraesCS7A01G263500.1	Wheat	nucleus	33.01	28.16
Bra032061.1-P	Field mustard	nucleus	19.14	27.68
Bra020709.1-P	Field mustard	nucleus	22.73	27.07
Bra040020.1-P	Field mustard	nucleus	22.73	25.96
Bra001264.1-P	Field mustard	nucleus	21.77	25.93
Bra037499.1-P	Field mustard	nucleus	21.05	25.51
Bra029666.1-P	Field mustard	nucleus	23.45	25.39
Bra036528.1-P	Field mustard	nucleus	19.62	23.77
Bra009805.1-P	Field mustard	nucleus	19.62	23.36
Bra023541.1-P	Field mustard	nucleus	17.46	23.17
Bra023858.1-P	Field mustard	nucleus	20.57	22.28
HORVU0Hr1G021050.5	Barley	cytosol	21.53	21.28
Bra021464.1-P	Field mustard	nucleus	16.03	20.87
Bra008668.1-P	Field mustard	nucleus	16.51	20.47
Bra020425.1-P	Field mustard	nucleus, plastid	16.27	19.88
Bra008669.1-P	Field mustard	nucleus	17.22	19.67
Bra001043.1-P	Field mustard	nucleus	10.05	18.42
Bra002709.1-P	Field mustard	nucleus	8.61	16.51

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra010908	EnsemblPlants:Bra010908.1	EnsemblPlants:Bra010908.1-P	InterPro:CCT_domain	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008270	GO:GO:0046872	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4D355
PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF20	SMART:SM00336
UniParc:UPI000254587F	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

AT1G28050 (E=5e-162) | zinc finger (B-box type) family protein

Coordinates

chrA08:+:17059719..17061525

Molecular Weight (calculated)

46248.0 Da

IEP (calculated)

5.615

GRAVY (calculated)

-0.690

Length

418 amino acids

Sequence
(BLAST)

001: MSSSSERVPC DFCNERAAVL FCRADAAKLC LPCDRHVHTA NLLSKKHVRS QICDNCGSEP VSVRCFTDSL VLCQECDWDV HGSCSVSDAH VRSVVEGFTG
101: CPSALELGAL WGIDLEGRKE EEKQVPVTME SFGMELDSWI SGSDVLQELV VPVPKKGGSS CGRYKQVLGK QLEELLRSGG GGVDDGECDG EAGEEGNMVP
201: EMQERLGWRR DEEEISGGGE VNQQPQTTSF TALLWNAANT SDGQRQSTQI WDFNLGKSRE PEDSSRMKAA YVTNDAASFK INSFVEVKKN DTCSTKAKGV
301: KEIFQDDYNQ STSGQVLTCE SNNLPITFGS EKGSNSSSEL NFTENIGGTS CKSTRRVATK ADLERLAQNR DNAMQRYKEK RKTRRYDKTI RYESRKARAD
401: TRLRVKGRFV KATEAPYP

Best Arabidopsis Sequence Match ( AT1G28050.1 )
(BLAST)

001: MSSSERVPCD FCGERTAVLF CRADTAKLCL PCDQQVHTAN LLSRKHVRSQ ICDNCGNEPV SVRCFTDNLI LCQECDWDVH GSCSVSDAHV RSAVEGFSGC
101: PSALELAALW GLDLEQGRKD EENQVPMMAM MMDNFGMQLD SWVLGSNELI VPSDTTFKKR GSCGSSCGRY KQVLCKQLEE LLKSGVVGGD GDDGDRDRDC
201: DREGACDGDG DGEAGEGLMV PEMSERLKWS RDVEEINGGG GGGVNQQWNA TTTNPSGGQS SQIWDFNLGQ SRGPEDTSRV EAAYVGKGAA SSFTINNFVD
301: HMNETCSTNV KGVKEIKKDD YKRSTSGQVQ PTKSESNNRP ITFGSEKGSN SSSDLHFTEH IAGTSCKTTR LVATKADLER LAQNRGDAMQ RYKEKRKTRR
401: YDKTIRYESR KARADTRLRV RGRFVKASEA PYP

Arabidopsis Description

COL15Zinc finger protein CONSTANS-LIKE 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7E8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.