Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra001815.1-P | |
| Bra031255.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G57660.1 | Bra001815.1-P | AT3G21150.1 | 21798944 |
| AT5G57660.1 | Bra031255.1-P | AT3G21150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49730 | Canola | nucleus | 100.0 | 100.0 |
| Bra020425.1-P | Field mustard | nucleus, plastid | 84.4 | 53.8 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 84.4 | 51.83 |
| KRH18980 | Soybean | nucleus | 55.05 | 32.88 |
| Bra001043.1-P | Field mustard | nucleus | 33.95 | 32.46 |
| KRH02915 | Soybean | nucleus | 54.13 | 31.55 |
| Bra036528.1-P | Field mustard | nucleus | 44.04 | 27.83 |
| Bra032061.1-P | Field mustard | nucleus | 35.78 | 26.99 |
| Bra009805.1-P | Field mustard | nucleus | 43.12 | 26.78 |
| Bra021464.1-P | Field mustard | nucleus | 30.73 | 20.87 |
| Bra008669.1-P | Field mustard | nucleus | 34.86 | 20.77 |
| Bra008668.1-P | Field mustard | nucleus | 31.19 | 20.18 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 33.95 | 20.05 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 33.03 | 19.51 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 33.03 | 19.46 |
| Os06t0275000-01 | Rice | mitochondrion | 34.4 | 18.99 |
| OQU85473 | Sorghum | nucleus | 31.65 | 18.85 |
| Bra023541.1-P | Field mustard | nucleus | 27.06 | 18.73 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 32.11 | 18.28 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 31.65 | 18.02 |
| EER88227 | Sorghum | nucleus | 33.95 | 18.0 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 31.65 | 17.92 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 34.86 | 17.76 |
| Bra020709.1-P | Field mustard | nucleus | 21.56 | 13.39 |
| Bra040020.1-P | Field mustard | nucleus | 21.1 | 12.57 |
| Bra001264.1-P | Field mustard | nucleus | 20.18 | 12.54 |
| Bra029666.1-P | Field mustard | nucleus | 22.02 | 12.44 |
| Bra037499.1-P | Field mustard | nucleus | 19.27 | 12.17 |
| Bra030070.1-P | Field mustard | nucleus | 13.76 | 9.74 |
| Bra041077.1-P | Field mustard | nucleus | 17.89 | 9.56 |
| Bra023858.1-P | Field mustard | nucleus | 16.51 | 9.33 |
| Bra004423.1-P | Field mustard | nucleus | 14.22 | 9.28 |
| Bra010908.1-P | Field mustard | nucleus | 16.51 | 8.61 |
Protein Annotations
| EnsemblPlants:Bra002709.1 | EnsemblPlants:Bra002709.1-P | EnsemblPlantsGene:Bra002709 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:CCT_domain | InterPro:IPR010402 |
| PANTHER:PTHR31319 | PANTHER:PTHR31319:SF14 | PFAM:PF06203 | PFscan:PS51017 | SEG:seg | UniParc:UPI0002544F9F |
| UniProt:M4CES7 | MapMan:35.1 | : | : | : | : |
Description
AT5G57660 (E=7e-088) ATCOL5, COL5 | zinc finger (B-box type) family protein
Coordinates
chrA10:+:8089354..8090081
Molecular Weight (calculated)
24609.5 Da
IEP (calculated)
7.594
GRAVY (calculated)
-0.681
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNSDELGLC PWLLPNDFSE PAKTEMKSSE FMFSDFDRLI DFEYPNSFNH HPPHNSAGAD SLVPVQTKTE PLPLSKNDHC FDIDFCRSKL SAFTYPTQSI
101: SHSVSTSSLE YGVVPDGNTS SEISIPFNRS TTTITASTAT TGDQASSMNR EARVLRYREK RKNRKFEKTI RYASRKAYAE SRPRIKGRFA KRTETENDDV
201: FFSHVYASAA QYGVVPTF
101: SHSVSTSSLE YGVVPDGNTS SEISIPFNRS TTTITASTAT TGDQASSMNR EARVLRYREK RKNRKFEKTI RYASRKAYAE SRPRIKGRFA KRTETENDDV
201: FFSHVYASAA QYGVVPTF
001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
Arabidopsis Description
COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.