Factsheet for Bra037499.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra023252.1-P
Bra035511.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	Bra023252.1-P	AT1G32230.1	19548978
AT5G48250.1	Bra035511.1-P	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86318	Canola	nucleus	100.0	96.37
Bra020709.1-P	Field mustard	nucleus	81.16	79.77
AT5G48250.1	Thale cress	nucleus	80.0	73.99
Bra001264.1-P	Field mustard	nucleus	65.8	64.67
Bra040020.1-P	Field mustard	nucleus	65.8	62.02
Bra029666.1-P	Field mustard	nucleus	66.38	59.33
KRH17709	Soybean	nucleus	58.55	49.39
KRG89998	Soybean	nucleus	58.55	49.39
VIT_12s0057g01350.t01	Wine grape	nucleus	59.13	49.16
KRH72628	Soybean	nucleus	57.39	48.89
KRH16989	Soybean	nucleus	57.97	48.66
PGSC0003DMT400074143	Potato	nucleus	55.36	46.81
VIT_00s0194g00070.t01	Wine grape	nucleus	55.07	45.89
Os02t0724000-01	Rice	nucleus	52.75	44.72
Os06t0298200-01	Rice	nucleus	52.17	44.12
PGSC0003DMT400044878	Potato	nucleus	52.46	44.04
Solyc07g045180.2.1	Tomato	nucleus	53.33	44.02
KXG19836	Sorghum	nucleus	52.17	43.8
Solyc05g020020.2.1	Tomato	nucleus	51.88	43.66
PGSC0003DMT400013624	Potato	nucleus	52.17	43.58
HORVU6Hr1G071950.2	Barley	nucleus	48.12	43.46
TraesCS7A01G218600.1	Wheat	nucleus	49.57	43.18
TraesCS7D01G220300.1	Wheat	nucleus	49.57	43.18
EES07342	Sorghum	nucleus	50.43	42.86
GSMUA_Achr3P04260_001	Banana	nucleus	52.17	42.86
TraesCS6A01G286400.3	Wheat	nucleus	48.41	42.82
TraesCS6D01G267100.1	Wheat	nucleus	48.41	42.6
GSMUA_Achr7P20150_001	Banana	nucleus	50.43	42.23
TraesCS6B01G315400.1	Wheat	nucleus	47.25	41.79
GSMUA_Achr5P22460_001	Banana	nucleus	47.25	41.69
GSMUA_Achr10P...	Banana	nucleus	48.41	41.65
GSMUA_Achr5P04270_001	Banana	nucleus	50.72	41.47
Zm00001d051684_P007	Maize	nucleus	48.41	41.13
GSMUA_Achr9P12860_001	Banana	nucleus	49.28	40.77
Zm00001d045804_P003	Maize	nucleus	51.3	40.6
Solyc12g006240.1.1	Tomato	nucleus	29.86	38.29
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	36.81	37.69
Zm00001d017885_P001	Maize	nucleus	44.64	33.41
Bra023858.1-P	Field mustard	nucleus	30.43	27.2
Bra030070.1-P	Field mustard	nucleus	22.32	25.0
Bra032061.1-P	Field mustard	nucleus	18.26	21.8
Bra023541.1-P	Field mustard	nucleus	19.71	21.59
Bra041077.1-P	Field mustard	nucleus	24.93	21.08
Bra010908.1-P	Field mustard	nucleus	25.51	21.05
Bra004423.1-P	Field mustard	nucleus	20.29	20.96
Bra008668.1-P	Field mustard	nucleus	19.71	20.18
Bra020425.1-P	Field mustard	nucleus, plastid	19.71	19.88
Bra036528.1-P	Field mustard	nucleus	19.42	19.42
Bra002709.1-P	Field mustard	nucleus	12.17	19.27
Bra009805.1-P	Field mustard	nucleus	19.42	19.09
Bra008669.1-P	Field mustard	nucleus	20.0	18.85
Bra021464.1-P	Field mustard	nucleus	16.52	17.76
Bra001043.1-P	Field mustard	nucleus	9.86	14.91

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra037499	EnsemblPlants:Bra037499.1	EnsemblPlants:Bra037499.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4F8T7	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF39	UniParc:UPI000253F916	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

AT5G48250 (E=3e-140) | zinc finger (B-box type) family protein

Coordinates

chrA06:-:21166158..21167560

Molecular Weight (calculated)

37891.0 Da

IEP (calculated)

6.341

GRAVY (calculated)

-0.672

Length

345 amino acids

Sequence
(BLAST)

001: MVHCRSDAAC LCLSCDRNVH SANALSKRHS RTLICERCNA QPASVRCTDE RVSLCQNCDW LGHNGATNSH HKKQTINCYS GCPSSEELAS IWSFCLELDF
101: SKGGQSACEQ GMGLMTIDEG TGEKKSGGHD VDVDQPGTSS AAQEKSTLAK GPGVSEDDFC GNLIMDEMDM AFEKYDELFG TAYNSSKDLF EHGGLESLFE
201: KHEGLIQGQQ PAESNAASGD SFMTCRTEPI ICFSSQPAHS NISFSGATGE GNNAGDFQDC GVSSMQQVSK ETPLWCPPTA QEISATTRNN AVIRYKEKKK
301: ARKFDKRVRY VSRKERADVR RRVKGRFVKS GEAYDYDPLS PTRSY

Best Arabidopsis Sequence Match ( AT5G48250.1 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNAQPASVRC SDERVSLCQN CDWSGHDGKN STTTSHHKRQ TINCYSGCPS
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY

Arabidopsis Description

COL10Zinc finger protein CONSTANS-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.