Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48250.1 | KRH39574 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | KRH74370 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | KRH74373 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH17709 | Soybean | nucleus | 93.89 | 93.89 |
| KRH72628 | Soybean | nucleus | 80.93 | 81.73 |
| KRH16989 | Soybean | nucleus | 81.66 | 81.27 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 69.44 | 68.43 |
| Bra001264.1-P | Field mustard | nucleus | 55.99 | 65.24 |
| CDY35952 | Canola | nucleus | 58.19 | 64.5 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 65.28 | 64.49 |
| AT3G07650.1 | Thale cress | nucleus | 58.19 | 63.98 |
| CDY28029 | Canola | nucleus | 57.7 | 63.44 |
| CDY07979 | Canola | nucleus | 54.52 | 63.35 |
| CDY22125 | Canola | nucleus | 55.26 | 61.75 |
| Bra040020.1-P | Field mustard | nucleus | 55.26 | 61.75 |
| Bra029666.1-P | Field mustard | nucleus | 58.19 | 61.66 |
| PGSC0003DMT400013624 | Potato | nucleus | 62.1 | 61.5 |
| Solyc05g020020.2.1 | Tomato | nucleus | 61.37 | 61.22 |
| CDY48743 | Canola | nucleus | 52.08 | 60.86 |
| PGSC0003DMT400074143 | Potato | nucleus | 60.39 | 60.54 |
| CDY05691 | Canola | nucleus | 51.34 | 60.52 |
| CDX85321 | Canola | nucleus | 52.81 | 60.17 |
| Bra020709.1-P | Field mustard | nucleus | 51.59 | 60.11 |
| AT5G48250.1 | Thale cress | nucleus | 54.77 | 60.05 |
| PGSC0003DMT400044878 | Potato | nucleus | 60.15 | 59.85 |
| CDX86318 | Canola | nucleus | 52.08 | 59.5 |
| CDX74034 | Canola | nucleus | 56.72 | 59.49 |
| Solyc07g045180.2.1 | Tomato | nucleus | 60.64 | 59.33 |
| Bra037499.1-P | Field mustard | nucleus | 49.39 | 58.55 |
| GSMUA_Achr3P04260_001 | Banana | nucleus | 59.9 | 58.33 |
| GSMUA_Achr9P12860_001 | Banana | nucleus | 57.95 | 56.83 |
| Os02t0724000-01 | Rice | nucleus | 56.48 | 56.76 |
| GSMUA_Achr10P... | Banana | nucleus | 55.01 | 56.11 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 56.48 | 56.07 |
| Os06t0298200-01 | Rice | nucleus | 55.75 | 55.88 |
| KXG19836 | Sorghum | nucleus | 55.5 | 55.23 |
| Solyc12g006240.1.1 | Tomato | nucleus | 35.94 | 54.65 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 52.08 | 54.48 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 52.08 | 53.79 |
| EES07342 | Sorghum | nucleus | 53.3 | 53.69 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 51.83 | 53.54 |
| HORVU6Hr1G071950.2 | Barley | nucleus | 49.88 | 53.4 |
| GSMUA_Achr5P04270_001 | Banana | nucleus | 55.01 | 53.32 |
| TraesCS6A01G286400.3 | Wheat | nucleus | 50.61 | 53.08 |
| Zm00001d051684_P007 | Maize | nucleus | 52.57 | 52.96 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 50.12 | 52.56 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 49.39 | 51.53 |
| Zm00001d045804_P003 | Maize | nucleus | 54.77 | 51.38 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 41.56 | 50.45 |
| Zm00001d017885_P001 | Maize | nucleus | 47.19 | 41.87 |
| KRH26833 | Soybean | nucleus | 40.1 | 38.77 |
| KRH22524 | Soybean | nucleus | 38.88 | 37.59 |
| KRG96381 | Soybean | nucleus | 23.23 | 27.07 |
| KRH68113 | Soybean | nucleus | 22.74 | 26.65 |
| KRH31920 | Soybean | nucleus | 22.49 | 26.44 |
| KRH71535 | Soybean | nucleus | 21.76 | 26.18 |
| KRH61628 | Soybean | nucleus, plastid | 19.32 | 25.57 |
| KRH52295 | Soybean | nucleus, plastid | 19.32 | 25.48 |
| KRH18308 | Soybean | nucleus | 21.27 | 24.1 |
| KRG93763 | Soybean | nucleus | 21.27 | 23.77 |
| KRH45169 | Soybean | nucleus | 19.8 | 23.28 |
| KRH01455 | Soybean | nucleus | 19.56 | 22.73 |
| KRH18980 | Soybean | nucleus | 20.05 | 22.47 |
| KRH02915 | Soybean | nucleus | 20.29 | 22.19 |
| KRG94656 | Soybean | nucleus | 20.78 | 22.08 |
| KRH06865 | Soybean | nucleus | 20.05 | 21.52 |
| KRH35868 | Soybean | nucleus | 22.74 | 21.23 |
| KRG90917 | Soybean | nucleus | 22.25 | 20.78 |
Protein Annotations
| EntrezGene:100796748 | MapMan:15.5.1.2 | EMBL:ACUP02012488 | InterPro:CCT_domain | EnsemblPlantsGene:GLYMA_20G060400 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0008270 | GO:GO:0046872 | InterPro:IPR000315 | InterPro:IPR010402 | UniProt:K7N1D6 | EnsemblPlants:KRG89998 |
| ProteinID:KRG89998 | ProteinID:KRG89998.1 | ProteinID:KRG89999.1 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 |
| PANTHER:PTHR31717 | PANTHER:PTHR31717:SF39 | SMART:SM00336 | UniParc:UPI0002957EB9 | InterPro:Znf_B-box | SEG:seg |
Description
hypothetical protein
Coordinates
chr20:+:18642438..18650232
Molecular Weight (calculated)
44402.9 Da
IEP (calculated)
4.568
GRAVY (calculated)
-0.389
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC VEEKISLCQN CDWLGHGTST SSSTHKRQAI NCYSGCPSAA
101: ELSSIWSFVL EIAAISESTC EQELGLMSIN ENKCVGVPPE DQNVSGSDEV TDLPALNKSL VGASLMPESS SEPCILDQPA GPTNECLPKL YCPATKCPAL
201: SEDDNLYDDF NMDEVDLDLE NYEELFGMAL SHSEELFENG GIDSLFGTKG MSAGDSNCQE AIAAEGSSVG QVNAMQPACS NAASADSILS TKTEPILCFT
301: GRQTQSNLSF SGVTGESSAG DYQDCGASSM LLMGEPPWFA PCPENSLQSA NRSNAVMRYK EKKKTRMFDK KVRYASRKAR ADVRRRVKGR FVKAGDVYDY
401: DPLSTTRSC
101: ELSSIWSFVL EIAAISESTC EQELGLMSIN ENKCVGVPPE DQNVSGSDEV TDLPALNKSL VGASLMPESS SEPCILDQPA GPTNECLPKL YCPATKCPAL
201: SEDDNLYDDF NMDEVDLDLE NYEELFGMAL SHSEELFENG GIDSLFGTKG MSAGDSNCQE AIAAEGSSVG QVNAMQPACS NAASADSILS TKTEPILCFT
301: GRQTQSNLSF SGVTGESSAG DYQDCGASSM LLMGEPPWFA PCPENSLQSA NRSNAVMRYK EKKKTRMFDK KVRYASRKAR ADVRRRVKGR FVKAGDVYDY
401: DPLSTTRSC
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
Arabidopsis Description
COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.