CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52295	Soybean	nucleus, plastid	95.47	95.16
KRH18980	Soybean	nucleus	54.69	46.3
KRH02915	Soybean	nucleus	54.69	45.19
KRH01455	Soybean	nucleus	47.9	42.05
KRH45169	Soybean	nucleus	45.95	40.8
KRH18308	Soybean	nucleus	47.25	40.44
KRG93763	Soybean	nucleus	47.9	40.44
PGSC0003DMT400068637	Potato	nucleus	31.72	36.98
PGSC0003DMT400016342	Potato	nucleus	31.07	36.36
PGSC0003DMT400092769	Potato	nucleus	29.13	34.75
TraesCS5A01G166100.1	Wheat	nucleus	33.01	31.29
TraesCS5D01G170700.1	Wheat	nucleus	32.69	31.08
TraesCS5B01G163500.1	Wheat	nucleus	32.36	30.77
Os09t0240200-01	Rice	nucleus	32.36	29.85
KRG96381	Soybean	nucleus	23.62	20.8
KRH31920	Soybean	nucleus	23.3	20.69
KRH16989	Soybean	nucleus	27.51	20.68
KRH68113	Soybean	nucleus	23.3	20.63
KRH71535	Soybean	nucleus	22.65	20.59
KRH72628	Soybean	nucleus	25.89	19.75
KRG89998	Soybean	nucleus	25.57	19.32
KRH17709	Soybean	nucleus	24.92	18.83
KRH06865	Soybean	nucleus	22.33	18.11
KRH26833	Soybean	nucleus	24.6	17.97
KRH22524	Soybean	nucleus	24.27	17.73
KRG94656	Soybean	nucleus	21.68	17.4
KRG90917	Soybean	nucleus	15.86	11.19
KRH35868	Soybean	nucleus	14.89	10.5

Protein Annotations

EntrezGene:100794431	MapMan:15.5.1.2	EMBL:ACUP02002179	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_04G058900	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0008270	GO:GO:0009416	GO:GO:0009628
GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	UniProt:I1JU45	InterPro:IPR000315	InterPro:IPR010402
EnsemblPlants:KRH61628	ProteinID:KRH61628	ProteinID:KRH61628.1	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF39	SMART:SM00336	UniParc:UPI0001BA67EB	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:4830134..4831900

Molecular Weight (calculated)

33734.4 Da

IEP (calculated)

7.352

GRAVY (calculated)

-0.409

Length

309 amino acids

Sequence
(BLAST)

001: MASKLCDSCK SATATLYCRP DAAFLCGACD SKVHAANKLA SRHPRVALCE VCEQAPAHVT CKADAAALCL ACDRDIHSAN PLASRHERIP VSPFFESVHS
101: VKASSPINFL DDHRFFSDAD ADVSTEEAEA ASWLLPNPKT DLNSSQYLFS ETEPVPYIDL DYAAVDPKAE QKSSATADGV VPVQSNFEPF AYGYKYNTTL
201: SQSQMSQSVS SSSMEVGVVP DGNTMSETSN CSYSKVPPVT VTVTAQFSAA DREARVLRYR EKRKNRKFEK TIRYASRKAY AEARPRIKGR FAKRTDPDPL
301: AGYGVVPSC

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.