CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39574
KRH74370
KRH74373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	KRH39574	AT1G32230.1	19548978
AT5G48250.1	KRH74370	AT1G32230.1	19548978
AT5G48250.1	KRH74373	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16989	Soybean	nucleus	94.81	93.43
KRH17709	Soybean	nucleus	82.22	81.42
KRG89998	Soybean	nucleus	81.73	80.93
VIT_12s0057g01350.t01	Wine grape	nucleus	68.4	66.75
CDY35952	Canola	nucleus	59.01	64.77
Bra001264.1-P	Field mustard	nucleus	56.05	64.67
CDY07979	Canola	nucleus	55.31	63.64
AT3G07650.1	Thale cress	nucleus	58.27	63.44
CDY28029	Canola	nucleus	58.27	63.44
VIT_00s0194g00070.t01	Wine grape	nucleus	64.2	62.8
Bra029666.1-P	Field mustard	nucleus	59.01	61.92
Bra040020.1-P	Field mustard	nucleus	55.56	61.48
CDY22125	Canola	nucleus	55.56	61.48
CDY48743	Canola	nucleus	52.35	60.57
AT5G48250.1	Thale cress	nucleus	55.56	60.32
Solyc05g020020.2.1	Tomato	nucleus	60.74	60.0
CDX85321	Canola	nucleus	53.09	59.89
Bra020709.1-P	Field mustard	nucleus	51.85	59.83
PGSC0003DMT400074143	Potato	nucleus	60.25	59.8
PGSC0003DMT400013624	Potato	nucleus	60.74	59.56
CDY05691	Canola	nucleus	50.86	59.37
CDX74034	Canola	nucleus	56.54	58.72
CDX86318	Canola	nucleus	51.6	58.38
PGSC0003DMT400044878	Potato	nucleus	58.52	57.66
Bra037499.1-P	Field mustard	nucleus	48.89	57.39
Solyc07g045180.2.1	Tomato	nucleus	58.52	56.7
GSMUA_Achr3P04260_001	Banana	nucleus	58.52	56.43
Os02t0724000-01	Rice	nucleus	56.3	56.02
GSMUA_Achr9P12860_001	Banana	nucleus	57.28	55.64
GSMUA_Achr10P...	Banana	nucleus	54.57	55.11
Os06t0298200-01	Rice	nucleus	54.81	54.41
KXG19836	Sorghum	nucleus	55.06	54.26
GSMUA_Achr7P20150_001	Banana	nucleus	55.06	54.13
Solyc12g006240.1.1	Tomato	nucleus	35.8	53.9
GSMUA_Achr5P22460_001	Banana	nucleus	51.85	53.71
TraesCS7D01G220300.1	Wheat	nucleus	52.35	53.54
TraesCS7A01G218600.1	Wheat	nucleus	52.1	53.28
HORVU6Hr1G071950.2	Barley	nucleus	49.38	52.36
TraesCS6A01G286400.3	Wheat	nucleus	50.37	52.31
EES07342	Sorghum	nucleus	52.35	52.22
TraesCS6D01G267100.1	Wheat	nucleus	49.88	51.53
GSMUA_Achr5P04270_001	Banana	nucleus	53.58	51.42
TraesCS6B01G315400.1	Wheat	nucleus	49.38	51.28
Zm00001d051684_P007	Maize	nucleus	51.11	50.99
Zm00001d045804_P003	Maize	nucleus	54.32	50.46
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	41.23	49.55
Zm00001d017885_P001	Maize	nucleus	46.91	41.21
KRH26833	Soybean	nucleus	39.75	38.06
KRH22524	Soybean	nucleus	38.52	36.88
KRG96381	Soybean	nucleus	23.21	26.78
KRH68113	Soybean	nucleus	22.96	26.65
KRH52295	Soybean	nucleus, plastid	20.0	26.13
KRH61628	Soybean	nucleus, plastid	19.75	25.89
KRH18308	Soybean	nucleus	22.96	25.76
KRG93763	Soybean	nucleus	22.96	25.41
KRH31920	Soybean	nucleus	21.73	25.29
KRH71535	Soybean	nucleus	20.99	25.0
KRH45169	Soybean	nucleus	21.48	25.0
KRH01455	Soybean	nucleus	21.23	24.43
KRH18980	Soybean	nucleus	21.23	23.56
KRG94656	Soybean	nucleus	22.22	23.38
KRH02915	Soybean	nucleus	21.48	23.26
KRH06865	Soybean	nucleus	20.49	21.78
KRH35868	Soybean	nucleus	22.72	21.0
KRG90917	Soybean	nucleus	22.72	21.0

Protein Annotations

EntrezGene:100787695	MapMan:15.5.1.2	EMBL:ACUP02001223	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_02G223700	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	UniProt:I1JH98	InterPro:IPR000315	InterPro:IPR010402	ProteinID:KRH72627.1	EnsemblPlants:KRH72628
ProteinID:KRH72628	ProteinID:KRH72628.1	ProteinID:KRH72629.1	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
PANTHER:PTHR31717	PANTHER:PTHR31717:SF39	SMART:SM00336	UniParc:UPI0002337857	InterPro:Znf_B-box	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:41140729..41148151

Molecular Weight (calculated)

44175.5 Da

IEP (calculated)

4.991

GRAVY (calculated)

-0.497

Length

405 amino acids

Sequence
(BLAST)

001: MGYLCDFCGD QRSLVYCRSD SACLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAFVRS VEEKISLCQN CDWLGHGTSP SSSMHKRQSI NCYSGCPSAA
101: EFSSIWSFFL DIPSLGEACE QELGLMSINE NIPPEGQNVS GSTEVTDLPS KGKSWAGTPS IPESSSEPRI LDQPPGPANE CVPKLYCPGK KASGICEDDD
201: LYDDFIMDEV DLELENYEEL FGMALSHSEE LFENGGINSL FEAKDMSASA GDSHCQGAVA AEGSSAGLVN PIQPACSNAA SADSVMSTKT EPIVCFTARQ
301: SQSNISFSGV TKDSAGDYQD CGASSMLLMG EPPWCPPCPE SSLHSANRSN AVMRYKEKKK TRKFEKKVRY ASRKARADVR KRVKGRFVKA GDVYDYDPLN
401: QTRSY

Best Arabidopsis Sequence Match ( AT3G07650.1 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.