Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012821_P003 | |
| Zm00001d014423_P002 | |
| Zm00001d030110_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48250.1 | Zm00001d012821_P003 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | Zm00001d014423_P002 | AT1G32230.1 | 19548978 |
| AT5G48250.1 | Zm00001d030110_P001 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG19836 | Sorghum | nucleus | 88.76 | 94.16 |
| Os06t0298200-01 | Rice | nucleus | 81.42 | 87.01 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 72.71 | 80.05 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 72.48 | 79.8 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 60.32 | 78.04 |
| Zm00001d051684_P007 | Maize | nucleus | 66.74 | 71.67 |
| Zm00001d017885_P001 | Maize | nucleus | 63.3 | 59.87 |
| GSMUA_Achr7P20150_001 | Banana | nucleus | 56.42 | 59.71 |
| GSMUA_Achr10P... | Banana | nucleus | 53.44 | 58.1 |
| Bra001264.1-P | Field mustard | nucleus | 45.64 | 56.7 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 53.67 | 56.52 |
| CDY07979 | Canola | nucleus | 45.41 | 56.25 |
| AT3G07650.1 | Thale cress | nucleus | 47.94 | 56.18 |
| CDY35952 | Canola | nucleus | 47.48 | 56.1 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 52.98 | 55.66 |
| CDY28029 | Canola | nucleus | 47.25 | 55.38 |
| Bra040020.1-P | Field mustard | nucleus | 46.33 | 55.19 |
| KRG89998 | Soybean | nucleus | 51.38 | 54.77 |
| KRH17709 | Soybean | nucleus | 51.38 | 54.77 |
| CDY22125 | Canola | nucleus | 45.64 | 54.37 |
| KRH72628 | Soybean | nucleus | 50.46 | 54.32 |
| KRH16989 | Soybean | nucleus | 50.69 | 53.77 |
| Bra029666.1-P | Field mustard | nucleus | 47.25 | 53.37 |
| CDX85321 | Canola | nucleus | 43.81 | 53.2 |
| AT5G48250.1 | Thale cress | nucleus | 44.95 | 52.55 |
| CDX86318 | Canola | nucleus | 42.89 | 52.23 |
| CDY48743 | Canola | nucleus | 41.74 | 52.0 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 46.56 | 51.92 |
| Bra020709.1-P | Field mustard | nucleus | 41.51 | 51.57 |
| Bra037499.1-P | Field mustard | nucleus | 40.6 | 51.3 |
| CDX74034 | Canola | nucleus | 45.87 | 51.28 |
| CDY05691 | Canola | nucleus | 40.6 | 51.01 |
| PGSC0003DMT400074143 | Potato | nucleus | 47.25 | 50.49 |
| PGSC0003DMT400013624 | Potato | nucleus | 47.71 | 50.36 |
| Solyc05g020020.2.1 | Tomato | nucleus | 47.02 | 50.0 |
| PGSC0003DMT400044878 | Potato | nucleus | 45.87 | 48.66 |
| Solyc07g045180.2.1 | Tomato | nucleus | 46.33 | 48.33 |
| Solyc12g006240.1.1 | Tomato | nucleus | 27.52 | 44.61 |
| Zm00001d025770_P001 | Maize | nucleus | 18.58 | 25.08 |
| Zm00001d003162_P001 | Maize | nucleus | 18.12 | 24.69 |
| Zm00001d051047_P001 | Maize | nucleus | 16.97 | 23.57 |
| Zm00001d017176_P001 | Maize | nucleus | 17.43 | 22.69 |
| Zm00001d029149_P001 | Maize | nucleus | 19.04 | 20.91 |
| Zm00001d024200_P001 | Maize | nucleus | 13.3 | 20.86 |
| Zm00001d022500_P001 | Maize | nucleus | 8.49 | 20.44 |
| Zm00001d007107_P001 | Maize | nucleus | 19.04 | 20.29 |
| Zm00001d031662_P001 | Maize | nucleus | 22.25 | 19.84 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 19.27 | 19.63 |
| Zm00001d046925_P001 | Maize | nucleus | 16.28 | 19.51 |
| Zm00001d015468_P001 | Maize | mitochondrion | 16.51 | 19.3 |
| Zm00001d049347_P001 | Maize | nucleus | 11.93 | 18.64 |
Protein Annotations
| EntrezGene:100282916 | MapMan:15.5.1.2 | UniProt:A0A1D6NZ62 | ProteinID:AQL03222.1 | ProteinID:AQL03228.1 | InterPro:CCT_domain |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:IPR010402 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF6 | SMART:SM00336 | UniParc:UPI000842FC78 | EnsemblPlantsGene:Zm00001d045804 |
| EnsemblPlants:Zm00001d045804_P003 | EnsemblPlants:Zm00001d045804_T003 | InterPro:Znf_B-box | SEG:seg | : | : |
Description
C2C2-CO-like-transcription factor 6Zinc finger protein CONSTANS-LIKE 9
Coordinates
chr9:-:40102185..40107942
Molecular Weight (calculated)
47324.5 Da
IEP (calculated)
5.894
GRAVY (calculated)
-0.337
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALCDFCGE HRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC LAENASLCQN CDWNGHIAGS SSAGHKRQTI NCYSGCPSSA
101: ELSRIWSFVS DIPNVAPEPN CEQGISMMSI SDSGVSNQDN AAGDSILLDI ASATLVSDIG TCDKLLVGSS SGAGVNLLPL ATGQTETAGS VDSTPDKVPY
201: TPDKDMFSKD SIYEDFCVDD ADLAFENYEE LFGTSHIQTE QLFDDAGIDI YFEMKEAPAG NSTERIWFGQ IRRCVFVFYY MIIIGFLSHA FQQSKLKQPA
301: NSNAVSADSG MSNPGVKGDS SVCTPLRQAR SSLSLSFAGL TGESSAGDHQ DCVVSSLLLM GEPPWQPPGP EGSIAGGSRD SALTRYKEKK MRRKFDKKIR
401: YASRKARADV RKRVKGRFVK AGEAYDYDPL CQTRSY
101: ELSRIWSFVS DIPNVAPEPN CEQGISMMSI SDSGVSNQDN AAGDSILLDI ASATLVSDIG TCDKLLVGSS SGAGVNLLPL ATGQTETAGS VDSTPDKVPY
201: TPDKDMFSKD SIYEDFCVDD ADLAFENYEE LFGTSHIQTE QLFDDAGIDI YFEMKEAPAG NSTERIWFGQ IRRCVFVFYY MIIIGFLSHA FQQSKLKQPA
301: NSNAVSADSG MSNPGVKGDS SVCTPLRQAR SSLSLSFAGL TGESSAGDHQ DCVVSSLLLM GEPPWQPPGP EGSIAGGSRD SALTRYKEKK MRRKFDKKIR
401: YASRKARADV RKRVKGRFVK AGEAYDYDPL CQTRSY
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY
Arabidopsis Description
COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.