Factsheet for Zm00001d051047_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05406	Sorghum	nucleus	83.44	77.98
Zm00001d017176_P001	Maize	nucleus	82.17	77.01
HORVU6Hr1G056000.2	Barley	nucleus	68.79	67.92
Os02t0610500-01	Rice	nucleus	71.66	67.77
TraesCS6D01G202000.1	Wheat	nucleus	67.52	66.88
TraesCS6B01G248400.1	Wheat	nucleus	68.15	66.67
TraesCS6A01G218900.1	Wheat	nucleus	67.83	66.36
Zm00001d025770_P001	Maize	nucleus	63.69	61.92
Zm00001d003162_P001	Maize	nucleus	62.42	61.25
GSMUA_Achr7P16370_001	Banana	nucleus	47.77	51.37
GSMUA_Achr10P...	Banana	nucleus	49.04	48.28
Zm00001d046925_P001	Maize	nucleus	45.22	39.01
Zm00001d015468_P001	Maize	mitochondrion	44.27	37.27
Zm00001d024200_P001	Maize	nucleus	28.34	32.01
Zm00001d049347_P001	Maize	nucleus	28.34	31.9
Zm00001d045735_P002	Maize	extracellular, vacuole	40.45	29.67
Zm00001d022500_P001	Maize	nucleus	10.51	18.23
Zm00001d051684_P007	Maize	nucleus	23.57	18.23
Zm00001d029149_P001	Maize	nucleus	21.97	17.38
Zm00001d045804_P003	Maize	nucleus	23.57	16.97
Zm00001d007107_P001	Maize	nucleus	21.66	16.63
Zm00001d031662_P001	Maize	nucleus	22.61	14.52
Zm00001d017885_P001	Maize	nucleus	20.7	14.1

Protein Annotations

MapMan:15.5.1.2	UniProt:A0A1D6Q4M1	ProteinID:AQK53505.1	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270
InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
PANTHER:PTHR31319	PANTHER:PTHR31319:SF21	SMART:SM00336	UniParc:UPI000842B91C	EnsemblPlantsGene:Zm00001d051047	EnsemblPlants:Zm00001d051047_P001
EnsemblPlants:Zm00001d051047_T001	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

Zinc finger protein CONSTANS-LIKE 5

Coordinates

chr4:+:138655083..138656121

Molecular Weight (calculated)

33285.6 Da

IEP (calculated)

5.410

GRAVY (calculated)

-0.382

Length

314 amino acids

Sequence
(BLAST)

001: MELEQKPPPP PAGYWSGVAG GRPCDACAAR PARLHCRADG AFLCPGCDAR AHGAGSRHAR AWLCEVCEHA PAAVTCRADA AALCAACDAD IHSANSLARR
101: HERLPVAPLL GALSDAPAPQ HFPSAAAAAG EEASAAEEED GSDEAEAASW LLPEPDNSHE DSAAADSFFA EPDAYLGVDL DFARCVDGVK AIGVPVTPAP
201: LELDMAAGSF FYPQHSMNHS IVQVPSSSEV AVSRGKEREA RLMRYREKRK SRRFDKTIRY ASRKAYAETR PRVKGRFAKR CSEDDDALEH EEAACFSPAG
301: SASASSDGVV PSLC

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.