Factsheet for Zm00001d049347_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024200_P001	Maize	nucleus	78.85	79.14
EES14798	Sorghum	nucleus	79.57	76.03
TraesCS7B01G032800.1	Wheat	nucleus	55.91	64.2
TraesCS7D01G131700.1	Wheat	nucleus	56.99	63.6
HORVU7Hr1G027560.1	Barley	nucleus	55.91	63.16
TraesCS7A01G132100.1	Wheat	nucleus	55.91	62.65
Os08t0249000-01	Rice	nucleus	35.48	55.0
Zm00001d025770_P001	Maize	nucleus	33.69	29.1
Zm00001d017176_P001	Maize	nucleus	34.05	28.36
Zm00001d051047_P001	Maize	nucleus	31.9	28.34
Zm00001d003162_P001	Maize	nucleus	31.9	27.81
Zm00001d015468_P001	Maize	mitochondrion	32.97	24.66
Zm00001d046925_P001	Maize	nucleus	30.47	23.35
Zm00001d045735_P002	Maize	extracellular, vacuole	30.82	20.09
Zm00001d022500_P001	Maize	nucleus	11.11	17.13
Zm00001d051684_P007	Maize	nucleus	19.0	13.05
Zm00001d045804_P003	Maize	nucleus	18.64	11.93
Zm00001d007107_P001	Maize	nucleus	16.85	11.49
Zm00001d017885_P001	Maize	nucleus	18.64	11.28
Zm00001d029149_P001	Maize	nucleus	15.05	10.58
Zm00001d031662_P001	Maize	nucleus	14.34	8.18

Protein Annotations

EntrezGene:100383826	MapMan:35.2	ProteinID:AIB05379.1	ProteinID:AQK50067.1	EMBL:BT068390	UniProt:C0PJC1
InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF35	SMART:SM00336	UniParc:UPI000195CDB8
EnsemblPlantsGene:Zm00001d049347	EnsemblPlants:Zm00001d049347_P001	EnsemblPlants:Zm00001d049347_T001	InterPro:Znf_B-box	SEG:seg	:

Description

Zinc finger protein CONSTANS-LIKE 5

Coordinates

chr4:-:27315744..27316583

Molecular Weight (calculated)

28456.7 Da

IEP (calculated)

6.019

GRAVY (calculated)

-0.146

Length

279 amino acids

Sequence
(BLAST)

001: MGGEGSTSPA PGGAACAVCG GAAVVYCVAD AAALCSPCDA AVHAANLLAS RHERVPLSMA AVPSASGAYD DLFAPDDVDA AAPAQAQGLG SPRNGSSSAS
101: FTTSGDSGAE GSSLFDFDLL SGVDLAACVT DGVAPLHHDD AAPLWAQPGL AVAWATAWSP ADSAAAVVAA AAEREARVQR YREKRKNRRF HKTIRYASRK
201: AYAEARPRIK GRFVKRAAGT SSSSSSGAGT PDDGNDATGA AAKFWLSFSD DARDGFYVDA GAYGVVPSFY RVRSEQLTS

Best Arabidopsis Sequence Match ( AT2G24790.1 )
(BLAST)

001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF

Arabidopsis Description

COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.