Factsheet for Zm00001d024200_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14798	Sorghum	nucleus	84.89	80.82
Zm00001d049347_P001	Maize	nucleus	79.14	78.85
TraesCS7B01G032800.1	Wheat	nucleus	59.35	67.9
TraesCS7D01G131700.1	Wheat	nucleus	59.35	66.0
TraesCS7A01G132100.1	Wheat	nucleus	58.63	65.46
HORVU7Hr1G027560.1	Barley	nucleus	57.19	64.37
Os08t0249000-01	Rice	nucleus	37.05	57.22
Zm00001d025770_P001	Maize	nucleus	34.17	29.41
Zm00001d003162_P001	Maize	nucleus	33.09	28.75
Zm00001d017176_P001	Maize	nucleus	34.17	28.36
Zm00001d051047_P001	Maize	nucleus	32.01	28.34
Zm00001d015468_P001	Maize	mitochondrion	33.09	24.66
Zm00001d046925_P001	Maize	nucleus	32.01	24.45
Zm00001d045735_P002	Maize	extracellular, vacuole	32.37	21.03
Zm00001d022500_P001	Maize	nucleus	10.43	16.02
Zm00001d045804_P003	Maize	nucleus	20.86	13.3
Zm00001d051684_P007	Maize	nucleus	19.06	13.05
Zm00001d007107_P001	Maize	nucleus	16.91	11.49
Zm00001d029149_P001	Maize	nucleus	16.19	11.34
Zm00001d017885_P001	Maize	nucleus	18.7	11.28
Zm00001d031662_P001	Maize	nucleus	16.19	9.2

Protein Annotations

EntrezGene:100281883	MapMan:35.2	ProteinID:AIB05774.1	ProteinID:AQK40783.1	UniProt:B6SZU8	EMBL:BT063654
InterPro:CCT_domain	EMBL:EU958263	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402
PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PFscan:PS51257	PANTHER:PTHR31319	PANTHER:PTHR31319:SF35
SMART:SM00336	UniParc:UPI000182CF51	EnsemblPlantsGene:Zm00001d024200	EnsemblPlants:Zm00001d024200_P001	EnsemblPlants:Zm00001d024200_T001	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

Zinc finger protein CONSTANS-LIKE 5

Coordinates

chr10:-:55274175..55275011

Molecular Weight (calculated)

28164.5 Da

IEP (calculated)

6.500

GRAVY (calculated)

-0.024

Length

278 amino acids

Sequence
(BLAST)

001: MGRSEGSTSP AAGGAACACA VCGGAAVVYC AADAAALCSP CDTAVHAANL LASRHERVPL SMVTAASGVY DDDLFAPDDI DAASSWASAP AQGQGSPQNG
101: SSSASFTTGD SGAEGRGLFD LLSDVDFAAC VTGGGGYLPD GVAPVVHHGA APLWAQPGLA AAAWTATWSP AVVVPGAAVV AAAAAEREAR VQRYREKRER
201: RKFQKTIRYA SRKAYAEARP RIKGRFVKRA AGTSSSSSSG AGTSDSIDAA AKFWLSFSDD ARDGFFVDAG AYGVVPSF

Best Arabidopsis Sequence Match ( AT2G24790.1 )
(BLAST)

001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF

Arabidopsis Description

COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.