CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024200_P001	Maize	nucleus	80.82	84.89
Zm00001d049347_P001	Maize	nucleus	76.03	79.57
TraesCS7B01G032800.1	Wheat	nucleus	59.25	71.19
TraesCS7D01G131700.1	Wheat	nucleus	58.56	68.4
TraesCS7A01G132100.1	Wheat	nucleus	58.22	68.27
HORVU7Hr1G027560.1	Barley	nucleus	57.19	67.61
Os08t0249000-01	Rice	nucleus	36.99	60.0
EES05406	Sorghum	nucleus	35.27	30.65
EES12446	Sorghum	nucleus	33.56	29.79
OQU84486	Sorghum	nucleus	33.56	25.13
EER90145	Sorghum	nucleus	32.19	25.0
EER88227	Sorghum	nucleus	31.16	22.14
OQU85473	Sorghum	nucleus	24.32	19.4
EES07342	Sorghum	nucleus	19.52	14.04
KXG19836	Sorghum	nucleus	19.52	13.87
EER99873	Sorghum	nucleus	17.47	12.35
EER94860	Sorghum	nucleus	16.1	11.38
EES14176	Sorghum	nucleus	18.15	10.82

Protein Annotations

MapMan:35.2	EntrezGene:8073262	UniProt:C5YJL4	InterPro:CCT_domain	EnsemblPlants:EES14798	ProteinID:EES14798
ProteinID:EES14798.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0008270
GO:GO:0009416	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	InterPro:IPR000315
InterPro:IPR010402	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF35
SMART:SM00336	EnsemblPlantsGene:SORBI_3007G092000	unigene:Sbi.20295	UniParc:UPI0001A87F4D	RefSeq:XP_002445303.1	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:15553232..15555157

Molecular Weight (calculated)

29109.5 Da

IEP (calculated)

6.235

GRAVY (calculated)

-0.039

Length

292 amino acids

Sequence
(BLAST)

001: MGSEGSTSPG GGGGAACAVC GGAAAVYCAA DAAALCGPCD AAVHAANLLA SRHERVPLSM AAVAAASGVY DDLFAPDDID AASSWAAAAH ASPQNGSSST
101: SFTTSDGGAE GRMSLFDLLS DVDLAAACVT GGGVGGYLPD GVAPVHHHGA APLWAQPGLQ AAAWTATWSP ADAAAAAAVV GVPGAAAVVA AAAEREARVQ
201: RYREKRKNRK FQKTIRYASR KAYAEARPRI KGRFVKRAGT SSSSSSGAGG TSDTNDATDA ASKFWLSFSD DGRDDGVGFY VDAGAYGVVP SF

Best Arabidopsis Sequence Match ( AT2G24790.1 )
(BLAST)

001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF

Arabidopsis Description

COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.