CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029149_P001	Maize	nucleus	86.92	90.43
Os03t0351100-01	Rice	nucleus	65.38	67.0
TraesCS4B01G155800.1	Wheat	nucleus	61.02	63.48
TraesCS4D01G167300.1	Wheat	nucleus	60.53	62.97
TraesCS4A01G140600.1	Wheat	nucleus	61.5	61.65
HORVU4Hr1G048700.1	Barley	nucleus, plastid	61.74	54.72
EER99873	Sorghum	nucleus	47.22	47.22
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	7.51	34.83
KRH31920	Soybean	nucleus	28.33	33.62
KRH68113	Soybean	nucleus	27.84	32.95
KRH71535	Soybean	nucleus	27.12	32.94
KRG96381	Soybean	nucleus	27.6	32.48
Bra004423.1-P	Field mustard	nucleus	25.91	32.04
CDY53026	Canola	nucleus	25.91	32.04
CDX80141	Canola	nucleus	25.67	31.93
AT2G47890.1	Thale cress	nucleus	25.42	31.63
VIT_07s0104g01360.t01	Wine grape	nucleus	30.02	31.47
PGSC0003DMT400029591	Potato	nucleus	28.57	31.13
Solyc09g074560.2.1	Tomato	nucleus	27.12	30.03
EES14176	Sorghum	nucleus	26.15	22.04
EES12446	Sorghum	nucleus	17.19	21.58
KXG19836	Sorghum	nucleus	20.82	20.92
EES05406	Sorghum	nucleus	16.95	20.83
EES07342	Sorghum	nucleus	19.61	19.95
EER88227	Sorghum	nucleus	17.19	17.27
EER90145	Sorghum	nucleus	15.01	16.49
OQU85473	Sorghum	nucleus	14.53	16.39
EES14798	Sorghum	nucleus	11.38	16.1
OQU84486	Sorghum	nucleus	14.53	15.38

Protein Annotations

MapMan:35.1	EntrezGene:8082654	UniProt:C5WZT5	InterPro:CCT_domain	EnsemblPlants:EER94860	ProteinID:EER94860
ProteinID:EER94860.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF10	SMART:SM00336	EnsemblPlantsGene:SORBI_3001G372700
unigene:Sbi.20975	UniParc:UPI0001A8344F	RefSeq:XP_002467862.1	InterPro:Znf_B-box	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:66070191..66074972

Molecular Weight (calculated)

44449.5 Da

IEP (calculated)

4.820

GRAVY (calculated)

-0.630

Length

413 amino acids

Sequence
(BLAST)

001: MGEDDDDQRN QMLGAGLDHE PERRPGEAEP EEGKKPAASE AEAGGDGAGT EAATCDYCGT AAAAVYCRAD SARLCLPCDR LVHGANGVCS RHARAPLCAD
101: CRAAGAVFRR ASSSAFLCSN CDFGRHRDGG DPPLHDRCAV QPYSGCPPAS DLAALLGVPL FDKPATEDGG AWWNIWEEPQ VLSLEDLIVP TTPCHGFEPL
201: LTPSSPKNRS ISPDGKMNEE ILRQLGELAE SDGGVQASAG REEAEQAGGD QFPSWASPQY ATGHGNFGTE NNHEVATMPT PLYENGRWNN CDLDALNDAC
301: KVEVAYDQVP VSSAEPCLSS FAPLSEICPS ISNGNSMEDN HQVNPGIGMP MQGLPKRTGF DVVPCPDRDS VISRYKAKRK TRRFDRQVRY ESRKVRADGR
401: LRIKGRFAKA NQT

Best Arabidopsis Sequence Match ( AT2G47890.1 )
(BLAST)

001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP

Arabidopsis Description

COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.