Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P20150_001 | Banana | nucleus | 53.93 | 11.65 |
| GSMUA_Achr5P22460_001 | Banana | nucleus | 50.56 | 11.51 |
| GSMUA_Achr10P... | Banana | nucleus | 51.69 | 11.47 |
| GSMUA_Achr9P12860_001 | Banana | nucleus | 52.81 | 11.27 |
| GSMUA_Achr3P04260_001 | Banana | nucleus | 50.56 | 10.71 |
| GSMUA_Achr5P04270_001 | Banana | nucleus | 50.56 | 10.66 |
| GSMUA_Achr7P16370_001 | Banana | nucleus | 32.58 | 9.93 |
| AT2G47890.1 | Thale cress | nucleus | 35.96 | 9.64 |
| CDX80141 | Canola | nucleus | 35.96 | 9.64 |
| Bra004423.1-P | Field mustard | nucleus | 35.96 | 9.58 |
| CDY53026 | Canola | nucleus | 35.96 | 9.58 |
| GSMUA_Achr10P... | Banana | nucleus | 33.71 | 9.4 |
| Os07t0667300-01 | Rice | nucleus | 39.33 | 9.21 |
| GSMUA_Achr9P19630_001 | Banana | nucleus | 33.71 | 9.01 |
| KRH68113 | Soybean | nucleus | 34.83 | 8.88 |
| KRG96381 | Soybean | nucleus | 34.83 | 8.83 |
| KRH71535 | Soybean | nucleus | 33.71 | 8.82 |
| TraesCS2D01G121400.1 | Wheat | nucleus | 37.08 | 8.66 |
| TraesCS2A01G119600.1 | Wheat | nucleus | 37.08 | 8.64 |
| KRH31920 | Soybean | nucleus | 33.71 | 8.62 |
| GSMUA_Achr3P08880_001 | Banana | nucleus | 39.33 | 8.58 |
| TraesCS2B01G140300.1 | Wheat | nucleus | 37.08 | 8.53 |
| GSMUA_Achr6P06130_001 | Banana | nucleus | 40.45 | 8.09 |
| TraesCS4B01G155800.1 | Wheat | nucleus | 35.96 | 8.06 |
| GSMUA_Achr11P... | Banana | nucleus | 31.46 | 8.05 |
| EER99873 | Sorghum | nucleus | 37.08 | 7.99 |
| Os03t0351100-01 | Rice | nucleus | 35.96 | 7.94 |
| PGSC0003DMT400029591 | Potato | nucleus | 33.71 | 7.92 |
| VIT_07s0104g01360.t01 | Wine grape | nucleus | 34.83 | 7.87 |
| GSMUA_Achr10P... | Banana | nucleus | 40.45 | 7.86 |
| TraesCS4D01G167300.1 | Wheat | nucleus | 34.83 | 7.81 |
| Solyc09g074560.2.1 | Tomato | nucleus | 32.58 | 7.77 |
| TraesCS4A01G140600.1 | Wheat | nucleus | 35.96 | 7.77 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.97 | 7.52 |
| EER94860 | Sorghum | nucleus | 34.83 | 7.51 |
| GSMUA_Achr1P23420_001 | Banana | nucleus | 28.09 | 7.46 |
| GSMUA_Achr11P... | Banana | nucleus | 40.45 | 6.95 |
| HORVU4Hr1G048700.1 | Barley | nucleus, plastid | 35.96 | 6.87 |
| GSMUA_Achr2P04960_001 | Banana | nucleus | 17.98 | 5.95 |
| GSMUA_Achr3P28130_001 | Banana | nucleus | 12.36 | 3.93 |
| GSMUA_Achr9P22690_001 | Banana | nucleus, plastid | 11.24 | 3.44 |
| Zm00001d022500_P001 | Maize | nucleus | 2.25 | 1.1 |
| HORVU2Hr1G020760.2 | Barley | cytosol, mitochondrion | 1.12 | 0.25 |
| GSMUA_Achr4P18680_001 | Banana | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P13590_001 | EnsemblPlants:GSMUA_Achr6T13590_001 | EnsemblPlantsGene:GSMUA_Achr6G13590_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF27 | PFscan:PS50119 | SEG:seg | SMART:SM00336 | UniParc:UPI000296C1B8 | UniProt:M0T6Q7 |
| MapMan:15.5.1.2 | : | : | : | : | : |
Description
Zinc finger protein CONSTANS-LIKE 12 [Source:GMGC_GENE;Acc:GSMUA_Achr6G13590_001]
Coordinates
chr6:-:9035984..9036253
Molecular Weight (calculated)
9492.5 Da
IEP (calculated)
7.646
GRAVY (calculated)
0.158
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MEPLCELCGA QRGLVYCKSD AARLCLPCDA FIHSANALSR RHLRALICDH CLTQHAAVGC LDDRHSLCQS CYRAGPTPAV AAPAIATTP
001: MEPKCDHCAT SQALIYCKSD LAKLCLNCDV HVHSANPLSH RHIRSLICEK CFSQPAAIRC LDEKVSYCQG CHWHESNCSE LGHRVQSLNP FSGCPSPTDF
101: NRMWSSILEP PVSGLLSPFV GSFPLNDLNN TMFDTAYSMV PHNISYTQNF SDNLSFFSTE SKGYPDMVLK LEEGEEDLCE GLNLDDAPLN FDVGDDIIGC
201: SSEVHIEPDH TVPNCLLIDK TNTSSFTGSN FTVDKALEAS PPGQQMNINT GLQLPLSPVL FGQIHPSLNI TGENNAADYQ DCGMSPGFIM SEAPWETNFE
301: VSCPQARNEA KLRYKEKKLK RSFGKQIRYA SRKARADTRK RVKGRFVKAG DSYDYDPSSP TTNN
101: NRMWSSILEP PVSGLLSPFV GSFPLNDLNN TMFDTAYSMV PHNISYTQNF SDNLSFFSTE SKGYPDMVLK LEEGEEDLCE GLNLDDAPLN FDVGDDIIGC
201: SSEVHIEPDH TVPNCLLIDK TNTSSFTGSN FTVDKALEAS PPGQQMNINT GLQLPLSPVL FGQIHPSLNI TGENNAADYQ DCGMSPGFIM SEAPWETNFE
301: VSCPQARNEA KLRYKEKKLK RSFGKQIRYA SRKARADTRK RVKGRFVKAG DSYDYDPSSP TTNN
Arabidopsis Description
B-box type zinc finger protein with CCT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.