Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4D01G167300.1 | Wheat | nucleus | 83.25 | 86.4 |
TraesCS4B01G155800.1 | Wheat | nucleus | 82.77 | 85.89 |
HORVU4Hr1G048700.1 | Barley | nucleus, plastid | 87.86 | 77.68 |
Os03t0351100-01 | Rice | nucleus | 65.05 | 66.5 |
EER94860 | Sorghum | nucleus | 61.65 | 61.5 |
Zm00001d029149_P001 | Maize | nucleus | 58.98 | 61.21 |
TraesCS2A01G119600.1 | Wheat | nucleus | 41.26 | 44.5 |
GSMUA_Achr6P13590_001 | Banana | cytosol, mitochondrion, nucleus | 7.77 | 35.96 |
AT2G47890.1 | Thale cress | nucleus | 26.21 | 32.53 |
KRH68113 | Soybean | nucleus | 27.43 | 32.38 |
KRG96381 | Soybean | nucleus | 27.43 | 32.19 |
KRH31920 | Soybean | nucleus | 26.7 | 31.61 |
VIT_07s0104g01360.t01 | Wine grape | nucleus | 29.85 | 31.22 |
KRH71535 | Soybean | nucleus | 25.73 | 31.18 |
Solyc09g074560.2.1 | Tomato | nucleus | 27.67 | 30.56 |
PGSC0003DMT400029591 | Potato | nucleus | 27.91 | 30.34 |
CDY53026 | Canola | nucleus | 24.03 | 29.64 |
Bra004423.1-P | Field mustard | nucleus | 23.79 | 29.34 |
CDX80141 | Canola | nucleus | 23.54 | 29.22 |
TraesCS7A01G263500.1 | Wheat | nucleus | 25.97 | 21.84 |
TraesCS6A01G218900.1 | Wheat | nucleus | 16.99 | 21.81 |
TraesCS6A01G286400.3 | Wheat | nucleus | 20.39 | 21.54 |
TraesCS2A01G353900.1 | Wheat | nucleus | 16.5 | 21.52 |
TraesCS7A01G218600.1 | Wheat | nucleus | 20.63 | 21.46 |
TraesCS7A01G132100.1 | Wheat | nucleus | 10.68 | 17.67 |
TraesCS7A01G211300.1 | Wheat | nucleus | 16.26 | 17.4 |
TraesCS6A01G289400.1 | Wheat | nucleus | 15.53 | 17.34 |
TraesCS6A01G150900.2 | Wheat | mitochondrion | 14.32 | 16.16 |
TraesCS7A01G497200.1 | Wheat | nucleus | 14.08 | 15.59 |
TraesCS5A01G166100.1 | Wheat | nucleus | 11.65 | 14.72 |
Protein Annotations
EnsemblPlants:TraesCS4A01G140600.1 | EnsemblPlantsGene:TraesCS4A01G140600 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
InterPro:Znf_B-box | ncoils:Coil | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF10 | PFAM:PF06203 | PFscan:PS50119 |
PFscan:PS51017 | SMART:SM00336 | TIGR:cd00021 | MapMan:15.5.1.2 | : | : |
Description
No Description!
Coordinates
chr4A:+:216145121..216147476
Molecular Weight (calculated)
45258.8 Da
IEP (calculated)
5.595
GRAVY (calculated)
-0.646
Length
412 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEISDRATR GAAPTKLFST SPSFPPVVHH MDMGQDERQD PELPAMEKEL SADAVACDYC SGPQSVVYCR ADSARLCLPC DRHVHAANAV CSRHLRAPLC
101: AACRATGAVF RHGGPEFLCS NCDFGRSRDG ELPLHDRCTV QGYTGRPSAH DLAALLGVPD LDKPSAGKAD DGWWAIWEEP QVFSLEDLIV PTTSCHSFQP
201: LVTPSSPKIQ NSPEGKTNDE VIRQLRELAE VDMGGGQITP REEAEQAAHQ LPSWTESQHT TGNGDFGTDN SHEVATMPTP GYENGGWNNN DCHALKDDCK
301: TEYEQEQAPA NSAEACLSLF VQMSELCPSM SNGGMMDDSQ QANPGIGMPM QAFPKRSGFD VVAGLDRDIV ISRYKEKRRT RRFDKQVRYE SRKARADSRL
401: RIKGRFAKAN QS
101: AACRATGAVF RHGGPEFLCS NCDFGRSRDG ELPLHDRCTV QGYTGRPSAH DLAALLGVPD LDKPSAGKAD DGWWAIWEEP QVFSLEDLIV PTTSCHSFQP
201: LVTPSSPKIQ NSPEGKTNDE VIRQLRELAE VDMGGGQITP REEAEQAAHQ LPSWTESQHT TGNGDFGTDN SHEVATMPTP GYENGGWNNN DCHALKDDCK
301: TEYEQEQAPA NSAEACLSLF VQMSELCPSM SNGGMMDDSQ QANPGIGMPM QAFPKRSGFD VVAGLDRDIV ISRYKEKRRT RRFDKQVRYE SRKARADSRL
401: RIKGRFAKAN QS
001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
Arabidopsis Description
COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.