Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G140900.1 | Wheat | mitochondrion | 95.34 | 95.6 |
| TraesCS6B01G179000.2 | Wheat | mitochondrion | 94.25 | 91.73 |
| TraesCS7A01G497200.1 | Wheat | nucleus | 55.89 | 54.84 |
| TraesCS2A01G353900.1 | Wheat | nucleus | 37.53 | 43.35 |
| TraesCS6A01G218900.1 | Wheat | nucleus | 37.81 | 42.99 |
| TraesCS7A01G132100.1 | Wheat | nucleus | 22.74 | 33.33 |
| TraesCS5A01G166100.1 | Wheat | nucleus | 28.77 | 32.21 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 31.51 | 31.17 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 30.41 | 28.83 |
| TraesCS6A01G286400.3 | Wheat | nucleus | 20.0 | 18.72 |
| TraesCS2A01G119600.1 | Wheat | nucleus | 16.99 | 16.23 |
| TraesCS7A01G218600.1 | Wheat | nucleus | 17.53 | 16.16 |
| TraesCS7A01G263500.1 | Wheat | nucleus | 20.0 | 14.9 |
| TraesCS4A01G140600.1 | Wheat | nucleus | 16.16 | 14.32 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G150900.2 | EnsemblPlantsGene:TraesCS6A01G150900 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
| InterPro:Znf_B-box | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF36 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr6A:-:134948100..134949373
Molecular Weight (calculated)
38112.5 Da
IEP (calculated)
5.883
GRAVY (calculated)
-0.268
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MELQGLGRYW GVGGRRCGSC RGSPAAVHCR TCDGGSGDGA YLCAGCGEGH ARAGHERVWV CEVCELAPAA VTCKADAAAL CAACDADIHH ANPLARRHER
101: VPVQPIGSSS PEGQEQEQDA FVMSFGGSVD GEKQQNPVVN LNDALEAGAG GKENVKLDFL FADMMDPFFG SELPRFPHAD SVVPSGGAVE LDFGGVAAPV
201: VVSNPSYSSY TAASLGGSQG SSSEVGLVPD AICGRGGGII ELDFAQSKAA YLPYTPTPSH STVSSVDVGS VPERSDSAVA AATPATGEGR EARLMRYREK
301: RKNRRFEKTI RYASRKAYAE SRPRVKGRFA KRADDADTDA VAAATITTPG PCVLDFGSYG VVPTF
101: VPVQPIGSSS PEGQEQEQDA FVMSFGGSVD GEKQQNPVVN LNDALEAGAG GKENVKLDFL FADMMDPFFG SELPRFPHAD SVVPSGGAVE LDFGGVAAPV
201: VVSNPSYSSY TAASLGGSQG SSSEVGLVPD AICGRGGGII ELDFAQSKAA YLPYTPTPSH STVSSVDVGS VPERSDSAVA AATPATGEGR EARLMRYREK
301: RKNRRFEKTI RYASRKAYAE SRPRVKGRFA KRADDADTDA VAAATITTPG PCVLDFGSYG VVPTF
001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
Arabidopsis Description
COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.