Factsheet for TraesCS6A01G218900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G202000.1	Wheat	nucleus	96.26	97.48
TraesCS6B01G248400.1	Wheat	nucleus	95.95	95.95
HORVU6Hr1G056000.2	Barley	nucleus	93.77	94.65
Os02t0610500-01	Rice	nucleus	76.95	74.4
EES05406	Sorghum	nucleus	72.27	69.05
Zm00001d051047_P001	Maize	nucleus	66.36	67.83
Zm00001d017176_P001	Maize	nucleus	70.09	67.16
TraesCS2A01G353900.1	Wheat	nucleus	62.31	63.29
GSMUA_Achr7P16370_001	Banana	nucleus	48.91	53.77
GSMUA_Achr10P...	Banana	nucleus	52.34	52.66
TraesCS7A01G132100.1	Wheat	nucleus	30.84	39.76
TraesCS6A01G150900.2	Wheat	mitochondrion	42.99	37.81
TraesCS7A01G497200.1	Wheat	nucleus	43.61	37.63
TraesCS5A01G166100.1	Wheat	nucleus	33.02	32.52
TraesCS6A01G289400.1	Wheat	nucleus	36.76	31.98
TraesCS7A01G211300.1	Wheat	nucleus	37.38	31.17
TraesCS6A01G286400.3	Wheat	nucleus	25.86	21.28
TraesCS2A01G119600.1	Wheat	nucleus	23.36	19.63
TraesCS7A01G218600.1	Wheat	nucleus	22.74	18.43
TraesCS4A01G140600.1	Wheat	nucleus	21.81	16.99
TraesCS7A01G263500.1	Wheat	nucleus	23.68	15.51

Protein Annotations

EnsemblPlants:TraesCS6A01G218900.1	EnsemblPlantsGene:TraesCS6A01G218900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:CCT_domain	InterPro:IPR000315	InterPro:IPR010402
InterPro:Znf_B-box	PANTHER:PTHR31319	PANTHER:PTHR31319:SF21	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	SEG:seg	SMART:SM00336	TIGR:cd00021	MapMan:15.5.1.2	:

Description

No Description!

Coordinates

chr6A:+:405166850..405167902

Molecular Weight (calculated)

33627.1 Da

IEP (calculated)

5.092

GRAVY (calculated)

-0.342

Length

321 amino acids

Sequence
(BLAST)

001: MKVEDQTVVG GGGGGGLWGL AGRPCDTCAV DAARLYCRSD GAYLCAGCDA RAHGAGSRHA RVWLCEVCEH APAAVTCRAD AAALCATCDA DIHSANPLAS
101: RHERLPVTPF LGGLADPPQP APSPSSAAAT QEDADDDGSN EAEAASWLLP EPGDSPEDST ATFFADSDAY LDLDFVRSMD GIKAIGVPVA PSKLDLAGGA
201: LFYPEHSMNQ SMSTSEVAVV PDALSAGGAP APAPSVAVVA SKGKEREARL MRYREKRKNR RFQKTIRYAS RKAYAETRPR IKGRFAKRTA EDDALEQDGP
301: FSPASSAHLA SEGDYGVVPS F

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.