Factsheet for TraesCS6A01G286400.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT5G48250.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT5G48250.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT5G48250.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT5G48250.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT5G48250.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G267100.1	Wheat	nucleus	94.87	94.39
HORVU6Hr1G071950.2	Barley	nucleus	88.21	90.05
TraesCS6B01G315400.1	Wheat	nucleus	89.74	89.74
Os02t0724000-01	Rice	nucleus	75.9	72.73
EES07342	Sorghum	nucleus	71.79	68.97
Zm00001d051684_P007	Maize	nucleus	70.51	67.73
TraesCS7A01G218600.1	Wheat	nucleus	66.67	65.66
Zm00001d017885_P001	Maize	nucleus	65.13	55.1
GSMUA_Achr7P20150_001	Banana	nucleus	57.69	54.61
Bra001264.1-P	Field mustard	nucleus	47.95	53.28
CDY07979	Canola	nucleus	47.95	53.12
CDY35952	Canola	nucleus	50.0	52.85
AT3G07650.1	Thale cress	nucleus	49.74	52.15
GSMUA_Achr10P...	Banana	nucleus	53.59	52.12
CDY28029	Canola	nucleus	49.49	51.88
VIT_12s0057g01350.t01	Wine grape	nucleus	55.13	51.81
Bra040020.1-P	Field mustard	nucleus	48.46	51.64
VIT_00s0194g00070.t01	Wine grape	nucleus	54.36	51.21
CDY22125	Canola	nucleus	47.95	51.09
CDY48743	Canola	nucleus	45.64	50.86
KRG89998	Soybean	nucleus	53.08	50.61
Bra029666.1-P	Field mustard	nucleus	50.0	50.52
Bra020709.1-P	Field mustard	nucleus	45.38	50.43
CDX85321	Canola	nucleus	46.41	50.42
AT5G48250.1	Thale cress	nucleus	48.21	50.4
KRH72628	Soybean	nucleus	52.31	50.37
KRH17709	Soybean	nucleus	52.82	50.37
CDX86318	Canola	nucleus	45.38	49.44
KRH16989	Soybean	nucleus	52.05	49.39
GSMUA_Achr5P22460_001	Banana	nucleus	49.49	49.36
CDY05691	Canola	nucleus	43.85	49.28
PGSC0003DMT400074143	Potato	nucleus	51.03	48.77
Bra037499.1-P	Field mustard	nucleus	42.82	48.41
CDX74034	Canola	nucleus	48.21	48.21
PGSC0003DMT400013624	Potato	nucleus	49.49	46.73
Solyc05g020020.2.1	Tomato	nucleus	48.46	46.1
PGSC0003DMT400044878	Potato	nucleus	47.44	45.01
Solyc07g045180.2.1	Tomato	nucleus	47.95	44.74
Solyc12g006240.1.1	Tomato	nucleus	30.0	43.49
TraesCS6A01G218900.1	Wheat	nucleus	21.28	25.86
TraesCS2A01G353900.1	Wheat	nucleus	20.77	25.63
TraesCS2A01G119600.1	Wheat	nucleus	23.33	23.82
TraesCS6A01G289400.1	Wheat	nucleus	20.26	21.41
TraesCS7A01G132100.1	Wheat	nucleus	13.59	21.29
TraesCS7A01G497200.1	Wheat	nucleus	19.74	20.7
TraesCS7A01G211300.1	Wheat	nucleus	20.26	20.52
TraesCS4A01G140600.1	Wheat	nucleus	21.54	20.39
TraesCS6A01G150900.2	Wheat	mitochondrion	18.72	20.0
TraesCS7A01G263500.1	Wheat	nucleus	24.36	19.39
TraesCS5A01G166100.1	Wheat	nucleus	14.87	17.79

Protein Annotations

EnsemblPlants:TraesCS6A01G286400.3	EnsemblPlantsGene:TraesCS6A01G286400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:CCT_domain	InterPro:IPR000315	InterPro:IPR010402
InterPro:Znf_B-box	PANTHER:PTHR31717	PANTHER:PTHR31717:SF6	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
SEG:seg	SMART:SM00336	TIGR:cd00021	MapMan:15.5.1.2	:	:

Description

No Description!

Coordinates

chr6A:+:518667475..518670073

Molecular Weight (calculated)

42826.9 Da

IEP (calculated)

4.654

GRAVY (calculated)

-0.527

Length

390 amino acids

Sequence
(BLAST)

001: MGALCDFCGE QRPTIYCRSD AASLCLSCDR NVHSANTLSQ RHMRTLLCDR CASQPAAVRC LEENTSLCQN CDWSGHAATS MAAVHLRQTI NCYSGCPSSE
101: ELARIWSFDF DAPSAAAEPN CEEGISMMSI NDSGVSNHCG VQQDCSLLDI ANSSLMSDPP TSEKLKSEDE MNLQPLPTHQ PAQSVSMAPK VPSVTDDDMF
201: NDGRIYENFC VDDNDLTFEN YEELFGTPHV QTEQLFDDAG IDSFFELKEM PAADCDQQLN PMRPKCSNAV SADSSLCVPA RQAISTISLS FSGLTGESNA
301: GDHQDCEVSP LLLMGEQPWL PPGSEGSSAG GSRGSALSRY MEKKKRRKFD KKIRYASRKA RADVRKRVKG RFVKAGEAYD YDPLSDTRSY

Best Arabidopsis Sequence Match ( AT5G48250.1 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNAQPASVRC SDERVSLCQN CDWSGHDGKN STTTSHHKRQ TINCYSGCPS
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY

Arabidopsis Description

COL10Zinc finger protein CONSTANS-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.