Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G551800.3 | Wheat | nucleus | 93.32 | 91.87 |
| TraesCS5B01G557500.2 | Wheat | nucleus | 93.32 | 91.87 |
| HORVU5Hr1G124010.1 | Barley | nucleus | 91.56 | 89.98 |
| HORVU0Hr1G014460.1 | Barley | nucleus | 69.6 | 68.63 |
| Os03t0854800-03 | Rice | nucleus | 53.95 | 52.57 |
| EER90487 | Sorghum | nucleus | 52.02 | 51.66 |
| GSMUA_Achr11P... | Banana | nucleus | 42.0 | 45.96 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 52.2 | 45.27 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 40.77 | 42.18 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 42.18 | 41.74 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 41.48 | 41.7 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 30.05 | 40.81 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 38.66 | 37.16 |
| CDY60257 | Canola | cytosol | 19.16 | 33.33 |
| Solyc08g005270.2.1 | Tomato | nucleus | 33.74 | 32.0 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 29.17 | 31.14 |
| PGSC0003DMT400038368 | Potato | nucleus | 31.11 | 30.05 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 32.69 | 29.86 |
| Solyc08g076420.2.1 | Tomato | nucleus | 31.11 | 29.65 |
| Bra023252.1-P | Field mustard | nucleus | 24.96 | 29.46 |
| CDY67026 | Canola | nucleus | 27.94 | 28.91 |
| CDY22597 | Canola | nucleus | 27.59 | 28.86 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 29.53 | 28.82 |
| Bra017317.1-P | Field mustard | nucleus | 26.71 | 28.68 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 29.17 | 28.47 |
| CDY32124 | Canola | nucleus | 26.36 | 28.3 |
| Bra005336.1-P | Field mustard | cytosol, nucleus, plastid | 26.01 | 28.24 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 24.25 | 27.99 |
| CDY31694 | Canola | nucleus | 25.66 | 27.65 |
| AT1G32230.1 | Thale cress | nucleus | 28.3 | 27.33 |
| CDY43007 | Canola | nucleus | 27.77 | 27.19 |
| Bra035511.1-P | Field mustard | cytosol | 26.54 | 27.06 |
| AT2G35510.3 | Thale cress | cytosol | 26.89 | 26.94 |
| Solyc06g066330.2.1 | Tomato | nucleus | 27.77 | 26.6 |
| PGSC0003DMT400043197 | Potato | nucleus | 27.42 | 26.26 |
| CDY41739 | Canola | cytosol | 23.9 | 24.73 |
| TraesCS4A01G059400.1 | Wheat | nucleus | 18.98 | 24.6 |
| KRH74373 | Soybean | mitochondrion | 16.7 | 19.92 |
| TraesCS7A01G409200.2 | Wheat | nucleus | 22.85 | 15.15 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G321300.1 | EnsemblPlantsGene:TraesCS4A01G321300 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 |
| GO:GO:0016740 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF4 |
| PFAM:PF12174 | PFscan:PS51059 | SEG:seg | SUPFAM:SSF56399 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr4A:+:609804687..609807321
Molecular Weight (calculated)
63014.0 Da
IEP (calculated)
9.274
GRAVY (calculated)
-0.416
Length
569 amino acids
Sequence
(BLAST)
(BLAST)
001: MERKAGMILD EHVLKANDRK RKHESAVKIT GTDDSAEVSQ HADGSAALKK SKMTSCAGHI LEWYKNFKTS GLPVRVLCYH QGKWRDFPEH VVNLVQQDFK
101: LKRPITNAVF KNQQVLLDFM HMVCIDSSMT TNKPIAWIDV HGNRFFPELC AGLVTSKPSQ HGKSDPSGKS EAGECAGTLI LTAGAESSSS DSVDAVLPHA
201: KKVHNYAAVE NKAGPAICLK ESASGNIHAA TCKQKIGQPV DSAVRKLLLE GAGQPFSEEN IVGIYRTPLV DQQGRARFNL FQKELEVTKM HRGNANVRYA
301: WLPCSKDAME EMMMRGVLEV TKPMLGPMYG IGTHLAPANC AKTCASYSDI DENGIMRMML CRVIMGNVEV VLPGSKQFQP TNERFDSGVD DLQKPKHYVI
401: WDANVHRHIY AEYAVVIKAP SMTNEYMARE DTASNVSEIR NSGSAESVIK DDSSETMASP AGKQQAPRFG RAPTRRPPTS PWMPLPMLFA AISTKVPRSD
501: MDVIHGHYEE FKRRKISRPE FVGRLRQIVG DKLLVSTVMR LQPKVVPPMA GAEVLPRRTP GTGEQHLQK
101: LKRPITNAVF KNQQVLLDFM HMVCIDSSMT TNKPIAWIDV HGNRFFPELC AGLVTSKPSQ HGKSDPSGKS EAGECAGTLI LTAGAESSSS DSVDAVLPHA
201: KKVHNYAAVE NKAGPAICLK ESASGNIHAA TCKQKIGQPV DSAVRKLLLE GAGQPFSEEN IVGIYRTPLV DQQGRARFNL FQKELEVTKM HRGNANVRYA
301: WLPCSKDAME EMMMRGVLEV TKPMLGPMYG IGTHLAPANC AKTCASYSDI DENGIMRMML CRVIMGNVEV VLPGSKQFQP TNERFDSGVD DLQKPKHYVI
401: WDANVHRHIY AEYAVVIKAP SMTNEYMARE DTASNVSEIR NSGSAESVIK DDSSETMASP AGKQQAPRFG RAPTRRPPTS PWMPLPMLFA AISTKVPRSD
501: MDVIHGHYEE FKRRKISRPE FVGRLRQIVG DKLLVSTVMR LQPKVVPPMA GAEVLPRRTP GTGEQHLQK
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.