Factsheet for TraesCS5A01G079100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1A01G260000.1
TraesCS1B01G210300.4
TraesCS1B01G270400.1
TraesCS1D01G199200.1
TraesCS1D01G259900.1
TraesCS3A01G402300.1
TraesCS3B01G435700.1
TraesCS3D01G397200.1
TraesCS4A01G057600.3
TraesCS4A01G235100.1
TraesCS4A01G321300.1
TraesCS4B01G079900.1
TraesCS4B01G247400.2
TraesCS4D01G078800.1
TraesCS4D01G246700.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37630.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT2G37630.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT2G37630.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT2G37630.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT2G37630.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT2G37630.1	TraesCS5D01G551800.3	AT1G32230.1	19548978
AT2G37630.1	TraesCS1A01G260000.1	AT1G65620.1	19228338
AT2G37630.1	TraesCS1B01G270400.1	AT1G65620.1	19228338
AT2G37630.1	TraesCS1D01G259900.1	AT1G65620.1	19228338
AT2G37630.1	TraesCS3A01G402300.1	AT1G65620.1	19228338
AT2G37630.1	TraesCS3B01G435700.1	AT1G65620.1	19228338
AT2G37630.1	TraesCS3D01G397200.1	AT1G65620.1	19228338
AT2G37630.1	TraesCS4A01G057600.3	AT3G29390.1	16243907
AT2G37630.1	TraesCS4B01G247400.2	AT3G29390.1	16243907
AT2G37630.1	TraesCS4D01G246700.1	AT3G29390.1	16243907
AT2G37630.1	TraesCS4A01G235100.1	AT5G66870.1	16243907
AT2G37630.1	TraesCS4B01G079900.1	AT5G66870.1	16243907
AT2G37630.1	TraesCS4D01G078800.1	AT5G66870.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	98.83	93.91
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	98.83	93.39
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	97.38	92.27
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	44.31	91.57
Os12t0572000-01	Rice	nucleus	73.47	73.68
Zm00001d030737_P001	Maize	nucleus	76.68	71.08
GSMUA_Achr7P10550_001	Banana	nucleus	62.1	69.61
EES17234	Sorghum	nucleus	76.09	68.5
GSMUA_Achr9P28330_001	Banana	nucleus	60.64	64.6
VIT_08s0007g00410.t01	Wine grape	nucleus	66.47	63.69
KRG99949	Soybean	nucleus	64.72	62.18
KRH49100	Soybean	nucleus	65.01	61.77
Solyc09g010840.1.1	Tomato	nucleus	62.97	60.0
PGSC0003DMT400022771	Potato	nucleus	62.97	59.83
KRG99521	Soybean	nucleus	60.64	59.09
Bra000011.1-P	Field mustard	nucleus	59.77	59.08
CDY07778	Canola	nucleus	59.77	59.08
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	50.73	58.98
GSMUA_Achr9P03320_001	Banana	nucleus	46.94	58.33
KRH66092	Soybean	nucleus	60.35	57.98
CDX91374	Canola	nucleus	60.35	57.98
CDX79747	Canola	nucleus	58.6	57.76
Bra005177.1-P	Field mustard	nucleus	59.18	56.23
AT2G37630.1	Thale cress	nucleus	60.06	56.13
CDX74943	Canola	nucleus	59.48	55.74
HORVU6Hr1G071420.2	Barley	plastid	26.24	48.91
GSMUA_Achr5P29070_001	Banana	nucleus	62.39	36.39
TraesCS4A01G322200.1	Wheat	nucleus	18.95	23.05
TraesCS2A01G157600.1	Wheat	nucleus	20.12	21.97
TraesCS5A01G227400.1	Wheat	nucleus	20.12	21.7
TraesCS4A01G189700.1	Wheat	nucleus	17.49	19.67
TraesCS5A01G142500.1	Wheat	nucleus	18.37	19.5

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	ncoils:Coil	GO:GO:0000793	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006351	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008356	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607
GO:GO:0009615	GO:GO:0009628	GO:GO:0009651	GO:GO:0009653	GO:GO:0009719	GO:GO:0009733
GO:GO:0009739	GO:GO:0009751	GO:GO:0009753	GO:GO:0009944	GO:GO:0009965	GO:GO:0009987
GO:GO:0010338	GO:GO:0042742	GO:GO:0042803	GO:GO:0043565	GO:GO:0045088	GO:GO:0045892
GO:GO:0046686	GO:GO:0050832	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF13921
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF457	InterPro:RS2/AS1	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS5A01G079100	EnsemblPlants:TraesCS5A01G079100.1	TIGR:cd00167	SEG:seg	:

Description

No Description!

Coordinates

chr5A:+:98429421..98430514

Molecular Weight (calculated)

39731.5 Da

IEP (calculated)

10.070

GRAVY (calculated)

-0.933

Length

343 amino acids

Sequence
(BLAST)

001: MEMKERQRWR PEEDAILRSY VRQYGPREWN LVAQRMNVPL DRDAKSCLER WKNYLRPGIK KGSLTDDEQR LVIRLQAKHG NKWKKIAAEV PGRTAKRLGK
101: WWEVFKEKQQ REIRDSRRPP PEPSPDERGR YEWLLENFAE KLVKERQQVG HHHHLMAAPM LPPWMSSTAA NGAPVSPAPP SPSVTLSLAS AVVPPPTAAP
201: WMQQQQQAPG MVADAPQAAL AELAECCREL DEGHRAWAAH RKEASWRLKR VELQLESERA CRRREAAEEF EAKMRALWEE QAAAVERLEA EYREKVAGLR
301: RDAELKEQKM AEQWAAKHAR LTKFLEQVGS SCRRWPPGEM NGR

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.