Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G067300.1 | nucleus |
| TraesCS4B01G224600.1 | nucleus |
| TraesCS4D01G225200.1 | nucleus |
| TraesCS5A01G079100.1 | nucleus |
| TraesCS5B01G086900.1 | nucleus |
| TraesCS5D01G093100.1 | nucleus |
| TraesCS7A01G228900.1 | |
| TraesCS7B01G195100.1 | |
| TraesCS7D01G229900.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G270400.1 | Wheat | plastid | 98.86 | 98.86 |
| TraesCS1A01G260000.1 | Wheat | plastid | 98.48 | 98.11 |
| HORVU1Hr1G064640.3 | Barley | plastid | 96.96 | 91.73 |
| Os05t0417000-00 | Rice | plastid | 78.33 | 73.84 |
| TraesCS3D01G397200.1 | Wheat | plastid | 69.58 | 70.66 |
| OQU78015 | Sorghum | plastid | 72.24 | 61.69 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 39.16 | 59.2 |
| PGSC0003DMT400002549 | Potato | plastid | 39.16 | 54.5 |
| AT1G65620.1 | Thale cress | plastid | 41.06 | 54.27 |
| Bra039733.1-P | Field mustard | nucleus, plastid | 41.06 | 53.47 |
| CDY46781 | Canola | nucleus, plastid | 41.06 | 53.47 |
| CDY16414 | Canola | nucleus, plastid | 41.06 | 53.47 |
| VIT_00s0340g00090.t01 | Wine grape | nucleus | 41.06 | 50.0 |
| KRH20638 | Soybean | nucleus | 39.54 | 48.6 |
| KRH13283 | Soybean | nucleus | 39.16 | 48.58 |
| Solyc11g008830.1.1 | Tomato | plastid | 39.92 | 45.65 |
| KRG88909 | Soybean | nucleus | 34.98 | 42.99 |
| TraesCS1D01G224000.1 | Wheat | mitochondrion | 28.9 | 40.21 |
| TraesCS5D01G157400.1 | Wheat | plastid | 27.0 | 40.11 |
| TraesCS3D01G093500.1 | Wheat | plastid | 34.98 | 35.8 |
| TraesCS2D01G008400.1 | Wheat | plastid | 25.48 | 31.16 |
| TraesCS4D01G078800.1 | Wheat | mitochondrion, nucleus, plastid | 32.7 | 30.28 |
| TraesCS4D01G197400.1 | Wheat | plastid | 25.1 | 29.6 |
| TraesCS1D01G113100.1 | Wheat | nucleus | 26.24 | 29.36 |
| TraesCS3D01G340000.1 | Wheat | cytosol | 23.95 | 25.4 |
| TraesCS4D01G014600.1 | Wheat | nucleus | 25.1 | 22.45 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G259900.1 | EnsemblPlantsGene:TraesCS1D01G259900 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF26 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr1D:-:353556888..353557788
Molecular Weight (calculated)
27062.9 Da
IEP (calculated)
7.780
GRAVY (calculated)
-0.037
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSASSFP GSVITMASSA AAVGAASSGA AGTGSPCAAC KFLRRKCQPD CVFAPYFPPD NPQKFVHVHR VFGASNVTKL LNELNPYQRE DAVNSLAYEA
101: DMRLRDPVYG CVGVISVLQH QLRQLQQDLT RARYELSKYQ AAAAVAVSAS VGCNGTPAMA DFIGNTVPNC TQNFINISHS TAIGAGLGFG HDQFAAVQML
201: ARSYEGEGAV ARLGVNGGSS GGYDFGYTSA MGAGPVSGLG PLSGGPFLKP GTAGGDERHT AAQ
101: DMRLRDPVYG CVGVISVLQH QLRQLQQDLT RARYELSKYQ AAAAVAVSAS VGCNGTPAMA DFIGNTVPNC TQNFINISHS TAIGAGLGFG HDQFAAVQML
201: ARSYEGEGAV ARLGVNGGSS GGYDFGYTSA MGAGPVSGLG PLSGGPFLKP GTAGGDERHT AAQ
001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
Arabidopsis Description
AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.