CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74943	nucleus
CDX79747	nucleus
CDX91374	nucleus
CDY07236	nucleus
CDY07237
CDY07778	nucleus
CDY54923	nucleus
CDY67746
CDY69735	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65620.1	CDX74943	AT2G37630.1	22822207
AT1G65620.1	CDX79747	AT2G37630.1	22822207
AT1G65620.1	CDX91374	AT2G37630.1	22822207
AT1G65620.1	CDY07778	AT2G37630.1	22822207
AT1G65620.1	CDX74943	AT2G37630.1	22822207
AT1G65620.1	CDX79747	AT2G37630.1	22822207
AT1G65620.1	CDX91374	AT2G37630.1	22822207
AT1G65620.1	CDY07778	AT2G37630.1	22822207
AT1G65620.1	CDY07237	AT4G00210.1	22822207
AT1G65620.1	CDY67746	AT4G00210.1	22822207
AT1G65620.1	CDY07236	AT4G00220.1	22822207
AT1G65620.1	CDY54923	AT4G00220.1	22822207
AT1G65620.1	CDY69735	AT4G00220.1	22822207
AT1G65620.1	CDY07236	AT4G00220.1	22822207
AT1G65620.1	CDY54923	AT4G00220.1	22822207
AT1G65620.1	CDY69735	AT4G00220.1	22822207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039733.1-P	Field mustard	nucleus, plastid	100.0	100.0
CDY16414	Canola	nucleus, plastid	100.0	100.0
AT1G65620.1	Thale cress	plastid	96.53	97.99
Solyc03g063140.2.1	Tomato	nucleus, plastid	64.36	74.71
VIT_00s0340g00090.t01	Wine grape	nucleus	77.72	72.69
PGSC0003DMT400002549	Potato	plastid	65.35	69.84
Solyc11g008830.1.1	Tomato	plastid	76.24	66.96
CDY03987	Canola	plastid	41.09	62.88
CDY49773	Canola	plastid	40.59	62.12
CDY20041	Canola	plastid	40.1	61.83
CDX83724	Canola	plastid	40.1	61.36
CDY13730	Canola	plastid	40.1	61.36
CDY48125	Canola	plastid	45.54	52.27
CDY16738	Canola	plastid	45.54	52.27
CDY69697	Canola	plastid	46.04	51.38
CDY68853	Canola	plastid	46.04	51.38
CDY72536	Canola	mitochondrion	34.65	50.72
CDY51008	Canola	mitochondrion	34.16	49.64
KRG88909	Soybean	nucleus	46.53	43.93
CDY66794	Canola	mitochondrion	35.15	43.56
CDY40054	Canola	mitochondrion	35.15	43.56
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	36.63	43.02
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	36.63	43.02
CDX81767	Canola	cytosol, nucleus, plastid	34.65	42.68
CDY50999	Canola	cytosol, mitochondrion, plastid	34.16	42.07
TraesCS1A01G260000.1	Wheat	plastid	53.96	41.29
TraesCS1D01G259900.1	Wheat	plastid	53.47	41.06
TraesCS1B01G270400.1	Wheat	plastid	53.47	41.06
Zm00001d042560_P002	Maize	plastid	52.48	40.77
TraesCS3B01G435700.1	Wheat	plastid	51.98	40.54
TraesCS3D01G397200.1	Wheat	plastid	51.49	40.15
TraesCS3A01G402300.1	Wheat	plastid	51.49	40.15
CDY24027	Canola	mitochondrion	36.63	39.36
Os05t0417000-00	Rice	plastid	53.96	39.07
HORVU1Hr1G064640.3	Barley	plastid	53.47	38.85
CDY10714	Canola	mitochondrion	36.14	38.62
Os01t0889400-02	Rice	plastid	50.99	38.29
HORVU3Hr1G090250.5	Barley	plastid	49.51	37.04
HORVU3Hr1G090240.2	Barley	plastid	49.51	37.04
CDY23903	Canola	plastid	35.15	35.86
CDY67958	Canola	plastid	35.15	35.86
CDY06285	Canola	nucleus, plastid	33.66	35.79
CDY22713	Canola	plastid	33.17	35.08
CDY06988	Canola	plastid	34.65	34.83
OQU88012	Sorghum	mitochondrion, vacuole	53.47	32.53
OQU78015	Sorghum	plastid	49.51	32.47
Zm00001d010264_P001	Maize	plastid	44.06	32.25
CDX93178	Canola	cytosol, nucleus, plastid	36.14	32.16
CDY04570	Canola	plastid	34.16	31.65
CDY24903	Canola	mitochondrion	35.64	31.17
CDY62454	Canola	plastid	33.17	30.88
CDY15755	Canola	plastid	33.17	30.88
CDX77182	Canola	plastid	33.17	30.88
CDY07604	Canola	mitochondrion	34.65	30.17
CDY31207	Canola	plastid	32.18	30.09
CDX93609	Canola	nucleus	33.17	29.78
CDX95115	Canola	plastid	33.17	29.39
CDY02059	Canola	mitochondrion	33.66	28.81
CDY10726	Canola	mitochondrion	33.66	28.81
Zm00001d038197_P001	Maize	plastid	39.6	28.78
CDX68120	Canola	mitochondrion, nucleus	43.56	28.57
CDX89590	Canola	mitochondrion, nucleus	43.56	28.57
CDX83290	Canola	plastid	32.67	28.57
CDY49845	Canola	nucleus, plastid	44.06	28.53
CDY52150	Canola	nucleus, plastid	43.56	27.85
CDY12784	Canola	nucleus, plastid	45.54	27.38
CDY01457	Canola	nucleus, plastid	45.54	27.22
CDY18621	Canola	nucleus, plastid	39.11	26.07
Zm00001d047521_P001	Maize	plastid	29.7	25.42
CDX81360	Canola	plastid	41.09	24.78

Protein Annotations

EnsemblPlants:CDY46781	EnsemblPlantsGene:GSBRNA2T00086200001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF5	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY16414.1	ProteinID:CDY46781	ProteinID:CDY46781.1
UniParc:UPI000254593B	UniProt:A0A078IA77	MapMan:15.5.24	:	:	:

Description

BnaCnng14500DBnaA02g12180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IA77]

Coordinates

chrLK032685:-:105806..107559

Molecular Weight (calculated)

22095.1 Da

IEP (calculated)

7.561

GRAVY (calculated)

-0.375

Length

202 amino acids

Sequence
(BLAST)

001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGANADGSTT ATVRDHHYHH HQFFPREQMF GGLDVPTGNN YDGGILAIGQ ISQFQQPRAA AGDDGRRTVD
201: PS

Best Arabidopsis Sequence Match ( AT1G65620.2 )
(BLAST)

001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS

Arabidopsis Description

AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.