Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0007g00410.t01 | nucleus |
| VIT_15s0048g00830.t01 | nucleus |
| VIT_15s0048g00840.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G65620.1 | Thale cress | plastid | 72.22 | 78.39 |
| Bra039733.1-P | Field mustard | nucleus, plastid | 72.69 | 77.72 |
| CDY16414 | Canola | nucleus, plastid | 72.69 | 77.72 |
| CDY46781 | Canola | nucleus, plastid | 72.69 | 77.72 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 61.57 | 76.44 |
| Solyc11g008830.1.1 | Tomato | plastid | 80.09 | 75.22 |
| PGSC0003DMT400002549 | Potato | plastid | 64.35 | 73.55 |
| VIT_14s0066g00680.t01 | Wine grape | nucleus, plastid | 40.28 | 51.18 |
| VIT_17s0000g09010.t01 | Wine grape | plastid | 42.13 | 49.46 |
| VIT_06s0004g07200.t01 | Wine grape | mitochondrion, nucleus | 35.65 | 47.24 |
| VIT_13s0067g01880.t01 | Wine grape | mitochondrion | 35.65 | 45.03 |
| KRG88909 | Soybean | nucleus | 43.98 | 44.39 |
| VIT_13s0019g03760.t01 | Wine grape | plastid | 27.78 | 43.8 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 34.26 | 42.29 |
| TraesCS1A01G260000.1 | Wheat | plastid | 50.46 | 41.29 |
| VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 32.41 | 41.18 |
| TraesCS1B01G270400.1 | Wheat | plastid | 50.0 | 41.06 |
| TraesCS1D01G259900.1 | Wheat | plastid | 50.0 | 41.06 |
| TraesCS3A01G402300.1 | Wheat | plastid | 47.69 | 39.77 |
| TraesCS3B01G435700.1 | Wheat | plastid | 47.69 | 39.77 |
| TraesCS3D01G397200.1 | Wheat | plastid | 47.69 | 39.77 |
| Zm00001d042560_P002 | Maize | plastid | 47.69 | 39.62 |
| HORVU1Hr1G064640.3 | Barley | plastid | 50.0 | 38.85 |
| Os05t0417000-00 | Rice | plastid | 50.0 | 38.71 |
| VIT_00s1247g00010.t01 | Wine grape | nucleus | 42.13 | 37.76 |
| VIT_13s0019g03750.t01 | Wine grape | plastid | 30.09 | 37.36 |
| Os01t0889400-02 | Rice | plastid | 46.3 | 37.17 |
| HORVU3Hr1G090240.2 | Barley | plastid | 45.37 | 36.3 |
| HORVU3Hr1G090250.5 | Barley | plastid | 45.37 | 36.3 |
| VIT_07s0197g00030.t01 | Wine grape | nucleus | 40.28 | 35.51 |
| VIT_13s0019g03710.t01 | Wine grape | nucleus, plastid | 26.85 | 35.15 |
| VIT_13s0019g03720.t01 | Wine grape | nucleus, plastid | 25.93 | 34.57 |
| VIT_13s0019g03780.t01 | Wine grape | plastid | 27.31 | 34.1 |
| VIT_13s0019g03700.t01 | Wine grape | plastid | 30.56 | 33.5 |
| VIT_06s0004g03350.t01 | Wine grape | plastid | 31.48 | 33.33 |
| OQU78015 | Sorghum | plastid | 46.76 | 32.79 |
| VIT_16s0022g02050.t01 | Wine grape | cytosol, mitochondrion, nucleus | 43.52 | 32.75 |
| VIT_06s0004g03330.t01 | Wine grape | nucleus, plastid | 30.56 | 32.67 |
| VIT_07s0197g00020.t01 | Wine grape | nucleus | 43.98 | 32.53 |
| VIT_07s0197g00040.t01 | Wine grape | cytosol, nucleus, plastid | 44.91 | 32.44 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 32.87 | 31.7 |
| OQU88012 | Sorghum | mitochondrion, vacuole | 48.61 | 31.63 |
| Zm00001d010264_P001 | Maize | plastid | 39.81 | 31.16 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 32.41 | 30.57 |
| Zm00001d038197_P001 | Maize | plastid | 37.04 | 28.78 |
| Zm00001d047521_P001 | Maize | plastid | 27.31 | 25.0 |
Protein Annotations
| EntrezGene:100262280 | wikigene:100262280 | MapMan:15.5.24 | ProteinID:CBI18626 | ProteinID:CBI18626.3 | ProteinID:CCB57277 |
| ProteinID:CCB57277.1 | ncoils:Coil | UniProt:D7SSJ3 | EMBL:FN594979 | EMBL:FN596016 | GO:GO:0000003 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009799 | GO:GO:0009908 | GO:GO:0009943 | GO:GO:0009944 |
| GO:GO:0009954 | GO:GO:0048441 | InterPro:IPR004883 | InterPro:LOB | EntrezGene:LOC100262280 | wikigene:LOC100262280 |
| PFAM:PF03195 | PFscan:PS50891 | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF5 | UniParc:UPI00019862B1 | ArrayExpress:VIT_00s0340g00090 |
| EnsemblPlantsGene:VIT_00s0340g00090 | EnsemblPlants:VIT_00s0340g00090.t01 | RefSeq:XP_002266137 | RefSeq:XP_002266137.1 | SEG:seg | : |
Description
No Description!
Coordinates
chrUn:+:24370759..24373011
Molecular Weight (calculated)
23864.1 Da
IEP (calculated)
8.180
GRAVY (calculated)
-0.464
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSNSPCA ACKFLRRKCQ PECVFAPYFP PDQPQKFANV HKVFGASNVT KLLNELHPHQ REDAVNSLAY EADMRLRDPV YGCVGVISVL QHQLRQLQMD
101: LSCAKSELSK YQNLGITSHG LIAAAAAAAT ATATTHNHHH HPQNLGINLI GGGRDHHYHH QFFPREQQQM IRTFDATNNY DASLLAMNVS ASIGQLSQFH
201: QPRAAGGDDR RSIDPS
101: LSCAKSELSK YQNLGITSHG LIAAAAAAAT ATATTHNHHH HPQNLGINLI GGGRDHHYHH QFFPREQQQM IRTFDATNNY DASLLAMNVS ASIGQLSQFH
201: QPRAAGGDDR RSIDPS
001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS
Arabidopsis Description
AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.