Factsheet for Zm00001d042560_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d028413_P001	nucleus
Zm00001d030364_P001	nucleus
Zm00001d030737_P001	nucleus
Zm00001d047921_P001	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65620.1	Zm00001d030737_P001	AT2G37630.1	22822207
AT1G65620.1	Zm00001d030737_P001	AT2G37630.1	22822207
AT1G65620.1	Zm00001d028413_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d030364_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d047921_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d028413_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d030364_P001	AT4G00220.1	22822207
AT1G65620.1	Zm00001d047921_P001	AT4G00220.1	22822207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0889400-02	Rice	plastid	81.92	79.18
OQU88012	Sorghum	mitochondrion, vacuole	97.31	76.2
TraesCS3D01G397200.1	Wheat	plastid	75.38	75.68
TraesCS3B01G435700.1	Wheat	plastid	75.38	75.68
TraesCS3A01G402300.1	Wheat	plastid	75.0	75.29
Solyc03g063140.2.1	Tomato	nucleus, plastid	37.69	56.32
AT1G65620.1	Thale cress	plastid	40.77	53.27
Zm00001d010264_P001	Maize	plastid	55.77	52.54
Bra039733.1-P	Field mustard	nucleus, plastid	40.77	52.48
CDY46781	Canola	nucleus, plastid	40.77	52.48
CDY16414	Canola	nucleus, plastid	40.77	52.48
PGSC0003DMT400002549	Potato	plastid	38.08	52.38
HORVU3Hr1G090250.5	Barley	plastid	53.46	51.48
HORVU3Hr1G090240.2	Barley	plastid	53.46	51.48
VIT_00s0340g00090.t01	Wine grape	nucleus	39.62	47.69
KRH20638	Soybean	nucleus	37.69	45.79
KRH13283	Soybean	nucleus	37.31	45.75
Solyc11g008830.1.1	Tomato	plastid	39.62	44.78
KRG88909	Soybean	nucleus	34.23	41.59
Zm00001d038013_P001	Maize	mitochondrion	28.08	37.44
Zm00001d038197_P001	Maize	plastid	38.08	35.61
Zm00001d047521_P001	Maize	plastid	31.54	34.75
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	26.15	34.17
Zm00001d039694_P001	Maize	plastid	34.23	34.1
Zm00001d033466_P001	Maize	plastid	24.62	30.33
Zm00001d010978_P001	Maize	plastid	24.62	30.19
Zm00001d009823_P001	Maize	plastid	25.38	30.14
Zm00001d033335_P001	Maize	plastid	31.92	29.54
Zm00001d035498_P001	Maize	plastid	24.62	28.96
Zm00001d013732_P001	Maize	plastid	32.69	28.43
Zm00001d043036_P001	Maize	cytosol	25.38	27.85
Zm00001d028721_P001	Maize	plastid	25.0	27.66
Zm00001d047752_P001	Maize	plastid	25.38	27.62

Protein Annotations

MapMan:15.5.24	EntrezGene:732739	UniProt:A0A1R3PRT6	ProteinID:ABM21683.1	EMBL:AY940681	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	InterPro:IPR004883	InterPro:LOB	ProteinID:ONM35777.1
PFAM:PF03195	PFscan:PS50891	PANTHER:PTHR31301	PANTHER:PTHR31301:SF33	UniProt:Q32SG3	UniParc:UPI00005E2435
EnsemblPlantsGene:Zm00001d042560	EnsemblPlants:Zm00001d042560_P002	EnsemblPlants:Zm00001d042560_T002	SEG:seg	:	:

Description

indeterminate gametophyte1LOB domain-containing protein 6

Coordinates

chr3:-:171820603..171823900

Molecular Weight (calculated)

26722.5 Da

IEP (calculated)

7.836

GRAVY (calculated)

-0.085

Length

260 amino acids

Sequence
(BLAST)

001: MASSVPAPSG SVITVASSSS SAAAAAVCGT GSPCAACKFL RRKCQPDCVF APYFPPDNPQ KFVHVHRVFG ASNVTKLLNE LHPFQREDAV NSLAYEADMR
101: LRDPVYGCVG VISILQHNLR QLQQDLARAK YELSKYQAAA AASASTAPTG PQAMAEFIGN AMPNGAHNFI NIGHSAALGS LGGSASVFGQ EQFGNAQMLS
201: RSYDGGEPIA RLGINGGGYE FGYSTAMGGS GAVSGLGTLG ISPFLKSGTA GGDEKPNGGQ

Best Arabidopsis Sequence Match ( AT1G65620.2 )
(BLAST)

001: MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI
101: DLSCAKSELS KYQSLGILAA THQSLGINLL AGAADGTATA VRDHYHHHQF FPREQMFGGL DVPAGNNYDG GILAIGQITQ FQQPRAAAGD DGRRTVDPS

Arabidopsis Description

AS2AS2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIA0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.