Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 79.15 | 83.92 |
| EER93717 | Sorghum | plastid | 80.09 | 81.64 |
| TraesCS4B01G016200.1 | Wheat | plastid | 56.87 | 68.57 |
| TraesCS4A01G297500.1 | Wheat | plastid | 55.92 | 68.21 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 56.87 | 67.42 |
| KRH50484 | Soybean | cytosol, nucleus, plastid | 45.97 | 61.01 |
| KRG89441 | Soybean | cytosol, nucleus, plastid | 46.45 | 59.76 |
| PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 47.39 | 58.48 |
| Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 47.39 | 58.48 |
| KRH11753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 46.92 | 58.24 |
| Solyc02g069440.2.1 | Tomato | nucleus | 44.08 | 57.76 |
| PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 44.08 | 57.76 |
| VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 46.45 | 57.65 |
| KRH36753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 45.97 | 57.06 |
| GSMUA_Achr5P02190_001 | Banana | mitochondrion | 44.08 | 56.02 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 46.45 | 56.0 |
| KRH43747 | Soybean | mitochondrion | 46.92 | 55.93 |
| AT1G31320.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 45.5 | 55.81 |
| Bra014907.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 45.5 | 55.81 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 45.5 | 55.81 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 45.02 | 55.23 |
| GSMUA_Achr2P13170_001 | Banana | nucleus | 44.55 | 54.02 |
| KRH13706 | Soybean | mitochondrion | 45.5 | 53.93 |
| GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 46.45 | 53.85 |
| GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 46.92 | 53.23 |
| CDY40054 | Canola | mitochondrion | 38.86 | 50.31 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 38.86 | 50.0 |
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 39.81 | 49.7 |
| CDY66794 | Canola | mitochondrion | 38.39 | 49.69 |
| Bra026042.1-P | Field mustard | mitochondrion | 38.39 | 49.69 |
| Solyc12g100150.1.1 | Tomato | mitochondrion | 38.86 | 48.81 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 37.91 | 48.78 |
| AT1G16530.1 | Thale cress | mitochondrion | 37.91 | 48.48 |
| Bra026716.1-P | Field mustard | mitochondrion | 37.44 | 48.17 |
| Zm00001d038013_P001 | Maize | mitochondrion | 38.86 | 42.05 |
| TraesCS4D01G014600.1 | Wheat | nucleus | 55.92 | 40.14 |
| Zm00001d010978_P001 | Maize | plastid | 39.34 | 39.15 |
| Zm00001d035498_P001 | Maize | plastid | 38.86 | 37.1 |
| Zm00001d009823_P001 | Maize | plastid | 35.07 | 33.79 |
| Zm00001d043036_P001 | Maize | cytosol | 36.02 | 32.07 |
| Zm00001d028721_P001 | Maize | plastid | 35.07 | 31.49 |
| Zm00001d047752_P001 | Maize | plastid | 35.07 | 30.96 |
| Zm00001d039694_P001 | Maize | plastid | 35.55 | 28.74 |
| Zm00001d042560_P002 | Maize | plastid | 30.33 | 24.62 |
| Zm00001d033335_P001 | Maize | plastid | 31.75 | 23.84 |
| Zm00001d013732_P001 | Maize | plastid | 32.7 | 23.08 |
| Zm00001d038197_P001 | Maize | plastid | 30.33 | 23.02 |
| Zm00001d010264_P001 | Maize | plastid | 29.86 | 22.83 |
| Zm00001d047521_P001 | Maize | plastid | 22.27 | 19.92 |
Protein Annotations
| EnsemblPlants:Zm00001d033466_P001 | EnsemblPlants:Zm00001d033466_T001 | EnsemblPlantsGene:Zm00001d033466 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF15 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:AAT42184.1 | ProteinID:ONM07647.1 |
| SEG:seg | UniParc:UPI00003B0438 | UniProt:Q6JAD1 | MapMan:15.5.24 | : | : |
Description
LBD-transcription factor 12Putative lateral organ boundaries (LOB) domain family
Coordinates
chr1:-:263448597..263450323
Molecular Weight (calculated)
21658.9 Da
IEP (calculated)
9.044
GRAVY (calculated)
0.004
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDAAVVVAV PGPGAATRGG GAKPGAAGAA PCAACKLLRR RCAAGCVFAP YFPPGEPHKF ASVHKVFGAS NVSKLLQEIP AQHRGDAVSS MVYEANARVR
101: DPVYGCAGAV SSLQQRVEAL QAQLALAQAE VVRLRMSNDY VLRRLKAAGA GAGAGGGSSS SYAGSPSSMS SLKTAAAAEP DARCRATTPE LLVLDMVVDQ
201: PGMDDAHFWS Y
101: DPVYGCAGAV SSLQQRVEAL QAQLALAQAE VVRLRMSNDY VLRRLKAAGA GAGAGGGSSS SYAGSPSSMS SLKTAAAAEP DARCRATTPE LLVLDMVVDQ
201: PGMDDAHFWS Y
001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
Arabidopsis Description
LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.